CI01000018_00550871_00552683 (MSC)


Basic Information

Item Value
gene id CI01000018_00550871_00552683
gene name MSC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 550801 ~ 553466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_00550871_00552683.mRNA
CTATTAAATCGCAGGACATCAGTTTTTTTCAAAATCAAGTTCTTTGCTCTGAAGCAGAGGTGCAGTCGTGATGTCCACGGGTTCGGTGAGTGATCCTGAAGACCTCCAGGAGCTGTCAATCACTCACATGGACACTCGTTCTCTGGAAGACTCAGAAGATGAGTTTAGTATCGATGACAGTTTGAAAGCAAAGACCAAACAACCTCGATCTGGTGCCAGCAACAACAAGCAACAAATGAAGATGGCAAAGGATGGCAGACAGTCTCAGAGAAATGCAGCAAATGCCAGAGAGAGGGCACGCATGAGAGTTCTGAGTAAAGCTTTCTCTCGGCTGAAGACCAGCCTGCCGTGGGTACCAGCAGACACCAAACTGTCAAAGCTGGACACGCTGCGTCTGGCATCCAGCTATATATCTCACCTCAGACAGCTCTTACAAGAGGACAGATACCAGAACAGCTTTGTGCATCCTGTAAACTTGACCTGGCCTTTTGTGGTCTCGGCACGATCAGAGGACACCAAAGAAATTTCAGCAGCGGTCAGACTATGTGGAGCTACAGCATAAACATCTGGCACCTCTCTGTCTTTTATCCCCCTCCATCTCTCCCTCCTTACTGTCTGTACTCATGCACTTCCTTTGAACTTACATCAATGGACATTATGCAATGAACGCAACTGCATGTGGGACATACCTATAGTTAAACAGCGAAGTCATTGCACACAAATCTGTTTTTATAGCATGATTGTTATGTTTATCTAGCAAATATAAGCAGATATTACTATGTGTTTGATTATTTTGCTGTCTGTGTGTTGCTTAAATGTAACTTTTAAAGAAAAAACACAGAAAATCACTTTTATTGTTTTAAAGTGCTCGTAATTTTTCTAACTACCCGTCAGACATTTAAAAATCTGATTTTGTCAGGATGTTTTCAACCTTTGGAAATTGCTTCAGTTTGTTTAGAGTTTTATTTTTCACTAAGTAGCAGGATCACGTATGTAATTAAGGCTACAGGTGGAATAGAACAGAAAATATTACACCAAGGTATGTTTAAGTTTATTTATGATTGTGATATTTGTGGTTTGTTCCATCTTTCTTTTTTTATTTGCTTTACATCATAACTAAAATGAATCGCTCAATGAATCAACATCCTTGATACATAATTTTTTTAATGTAGGCTACCAGATGAAGTCATTCATATCACTGTAGACATGCCTGTTGATCAAGTGTATCTAATTTTTCATTGGTATAGTTACGCTGTGATTCAGTTGGGAGAACTACACTATATTACACATAAACTGTAATGTGTCACTTAATAGGAATTCTTTGAGGAATGTACTAGTTGGCTAA

Function

symbol description
msc Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within skeletal muscle tissue development. Is expressed in head and musculature system.

GO: NA

KEGG:

id description
K09072 MSC; musculin (activated B-cell factor-1)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_00550871_00552683.mRNA True 1345 mRNA 0.39 2 550801 553466

Neighbor

gene id symbol gene type direction distance location
CI01000018_00509000_00541125 TRPA1B coding upstream 9509 508944 ~ 541292 (+)
CI01000018_00493207_00493553 NA coding upstream 57097 493207 ~ 493704 (+)
CI01000018_00312158_00314088 NA coding upstream 235912 311176 ~ 314889 (+)
CI01000018_00296756_00298858 NA coding upstream 251685 296682 ~ 299116 (+)
CI01000018_00274314_00277424 NA coding upstream 273356 273928 ~ 277445 (+)
CI01000018_00641198_00648887 EYA1 coding downstream 87732 641198 ~ 649104 (+)
CI01000018_00653069_00678015 EYA1 coding downstream 99603 653069 ~ 678015 (+)
CI01000018_00791508_00801917 TRAM1 coding downstream 237917 791383 ~ 802946 (+)
CI01000018_00857807_00915417 NCOA2 coding downstream 304341 857807 ~ 916053 (+)
CI01000018_00924089_00929734 PRDM14 coding downstream 370623 924089 ~ 929903 (+)
G102305 NA non-coding upstream 48870 501677 ~ 501931 (+)
G102298 NA non-coding upstream 55712 494877 ~ 495089 (+)
G102139 NA non-coding upstream 354479 182265 ~ 196322 (+)
G102140 NA non-coding upstream 357810 187962 ~ 192991 (+)
G102131 NA non-coding upstream 376899 143965 ~ 173902 (+)
G102527 NA non-coding downstream 5487 558953 ~ 559322 (+)
G102544 NA non-coding downstream 21618 575084 ~ 575305 (+)
G102630 NA non-coding downstream 223109 776575 ~ 778299 (+)
G102675 NA non-coding downstream 233531 786997 ~ 787232 (+)
G102697 NA non-coding downstream 395829 949295 ~ 949519 (+)
G102895 NA other downstream 1029447 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 1415786 1924489 ~ 1985311 (+)
G104258 NA other downstream 3137623 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 3816720 4368179 ~ 4375866 (+)
G104670 NA other downstream 4202335 4755801 ~ 4759768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022834 msc coding NC_007135.7 CM002908.2 13735616 ~ 13741624 (+)