RNA id: TCONS_00045409


Basic Information

Item Value
RNA id TCONS_00045409
length 3081
RNA type mRNA
GC content 0.32
exon number 3
gene id XLOC_022844
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14581864 ~ 14601780 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caatttacaataataatcattagattatttacattgttacattatttagataattaaaatagaaaaagccaacaaaaatcaaataaaagtcaAACTATAATAAAGAGATAACAATAGGTCATCTGATCTGATGATAGACATATACTAGAGAAGAAACTGAGTGAAAGGGGCATTCGTCAGGAAGTACTACGTTATATGTGTTGCGCTGCTGCCCGAAAATGTGCCTGACTAGAAAAACTGCAGAGGACCCTGATTCCCCGTCTGCCCTCATTACACTGATTGATCGGTAAGGTTTGTACAGTCTGTTTGATATTATGTTGTCGTGACTGTTCCAACCGTGTTTTATCTGCAGTTGTAGTTACGGTATAATTACCACTGTCTGAAGTAAACCATTTATGAACATGCCACCGGGTTTTTTGCTCTTTTCTGTCTTAAAACATAACGAGGTTCCTACAGAGACTAATGTTATTATCTTTTGCTCTATTTTTAAGTACTATACTTTTAACGTTACGTCTTTACTAATAAACAATACTGATAAACACTCTACAAAGTACTTtgctaaattattattgttcattttgttctgttttgcagAAAGTCACTGGTTTACATGGGAATTTTAATTGTGTCTTGGTGTTTTTTATATCCCAGTACCAAAATGACTGTAGAAGTGGAAAGAAAATTCGTGTGTGATGCAGAAATTATGAGGAAACTACAGGATATTGGAgCCGAATGCGTTGGTGAGCGAGAGTTTGGAGACCAGTACTTTGACTCTCCAGATTTCCTTCTCACGCTGAAGGATTTCTGGCTGAGATGCAGAGACGGACAGTGGGAGTTGAAAAGCCCTGCAGTTTCAGAAGCTCCAGCTGAGACGCTCTGCACTCGATACAGAGAGATAACCAGCCTGCCTGTGATTCAATCAGAAGTCAGCAAGATTATCAGAGAATCAAACTGCTCACAAAGGAAACAAATTGGCCAAACTGAGGACACGCCGATCTGTTCGACAGGAGACACAAAGTGGCTGAATGAGCTCGGTCTGGTGTGTTTTGCTGAGTTTAGGACTCAGCGTTGCTCTTATGTGCTGGAGAGGGAGGACGGAGCGGTGCGGGTGGATCTGGACCGGGCTGATTTCGGTTATTGTGTGGGGGAAATTGAGGTGTTGGTGCCTGAAGGAGGAGACGTgaatgcagctctgcagagtaTTACAAGCATTGCTGAACAGCTggGTTTGAACTCTGAGAAGAAAGTAAAGGGAAAAATGGATGTTTTTCTTCAAAGAAATCGACCAGATCATTACAACAAACTTCTTAGTGCTCATATTTTATGAGGTAGCTCTTTTGTAACATTGAAAGTTTTTAACTGATTAAGTTATGGAAACTTGCACTAATGCTCATATTTTCATGAGCAAGTAATATCTGTTAATATAATGTATGGCGTGATAATAATAAATTTGCTCTGGTCTTGTCAAAGGGAAATACACATAAAAACAGGCAACAAAAGGTATAGTTTGTGACATTATGATGTTTGTGGTTATTGCCAAATAAAGCAGGTATCTGACATGGTTTGTTTTTGGCAATTGTTTGAGAGGGTGTTTTTATGCTCCTGTTACATCACTGTGAggtatttatgtttgtttatctaACAAATATGGACTTGCTTTTAAGAGCCAGTTGATTTGATTACATTAGAAATTGCAAAATGTTAAGTTTAAATATCCATGGGAAACATTGTTTTAGTAAATGTTCAgtgatttgcatacatttcttgcACAAAAATGTAGTCGGGTTCAACATTTGTGTTGaatatttttcaggtttttaaagaagattattgtttatttaatatttatttatttttaaagttataattAGTGTTTAACAAGACCATACATAGTAGGTATACAATACAACATAGGAAAAATTAGACTGTCtttttcttattttcccactatcaccccaaaataaaataaacataatttataaataaaaaaaacatatcctctaaaagaaaaaaaaaattaaaatagtttttttgttaatacatttttttcagtttttatagaATAAATATGCTATGATCAAGCAATTTAATGTTGGAGGGGAAATTTATAACTCATTGCAGAAGGAAAGCTCATTTTGAGAGAACtaccttttaaaatatgttttgtaacaactttaaaaaggaaaaagtgcaaaaaaaaaaaggaaaatagttTCACCATTTACAACTACATGTATCGtctcactttatttttaaaatattagctggggaaatgtttatttaaggttaaaaaaaaatcatgtattttatgaaaatatgaAATGTAACAGTGTGTATAATAGTAGTTTCTAACTTTCAGCATTGACCAGAGCAGATTGTCTTTGGGATTCAGTGTTTGTTCAGCAGAGGGCGCAGTTCACTTTCTCTTCAGCTGTTCTCTCAGTCATCCTGCAGAGGGCGCTGTGTTCCTGAAAAATCATTTGCAAGATCATTATTACAGTCGGCTTTCACGCCAGCTGTTGGGTAACTACTGAAACCAAGTAGAAATGATTAGAATAATCTTTATTCATCAGTGTGATGAGTTATAATCAGTTGATTAATCAGATCAGTTATTTCAGTATTGTATATCATTATGTGGTGGATGCACATTTTCATTCAGAAATGTTTGTGCATgaaattgttaatatttaattttaataaaaactgaaatattaggctaaaaaacataaataataaaaatgcaagcttaatattgttatatttaataaaaaaaatatataatagttttaaatatgaaattataaatatgaaaatcGTACAAGATGGTGTAATTGAAATGTTTTGGATACAGTTTTTTTAACATCACTTGTTAGATCTTTATTAAGCACtacaatgattaaaaaaaaatttgttatacaataaatgtaaaactgcaaTGATTTGATACAGAAAGTGcttaaaatatgaacatatatATAGTGAAttacaaattatgaaaataatgtaTTATATGTACTAAACAATGtattatatgtattaatatttattgttttgtattataattatatgtcaattaaaaat

Function

GO:

id name namespace
GO:0006772 thiamine metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0042357 thiamine diphosphate metabolic process biological_process
GO:0050333 thiamin-triphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

ZFIN:

id description
ZDB-GENE-070502-2 Enables thiamin-triphosphatase activity. Predicted to be involved in dephosphorylation and thiamine diphosphate metabolic process. Predicted to act upstream of or within thiamine metabolic process. Predicted to be located in cytoplasm. Orthologous to human THTPA (thiamine triphosphatase).

Ensembl:

ensembl_id ENSDART00000189201

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046951 lncRNA upstream 9651 14582244 ~ 14585809 (+) True XLOC_022845
TCONS_00045407 lncRNA upstream 40106 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00045405 lncRNA upstream 44847 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA upstream 45877 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00046950 lncRNA upstream 516824 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00045432 lncRNA downstream 1547660 16149440 ~ 16164447 (+) True XLOC_022858
TCONS_00046802 lncRNA downstream 1564985 16166765 ~ 16185858 (+) False XLOC_022859
TCONS_00046952 lncRNA downstream 1570131 16171911 ~ 16194730 (+) True XLOC_022859
TCONS_00045433 lncRNA downstream 1572419 16174199 ~ 16175294 (+) False XLOC_022860
TCONS_00045434 lncRNA downstream 1572739 16174519 ~ 16177300 (+) False XLOC_022860
TCONS_00045404 mRNA upstream 38302 14541013 ~ 14557158 (+) False XLOC_022843
TCONS_00045403 mRNA upstream 63391 14527935 ~ 14532069 (+) True XLOC_022842
TCONS_00045402 mRNA upstream 139357 14451404 ~ 14456103 (+) False XLOC_022841
TCONS_00045401 mRNA upstream 139357 14451404 ~ 14456103 (+) True XLOC_022841
TCONS_00045398 mRNA upstream 150323 14302503 ~ 14445137 (+) True XLOC_022839
TCONS_00045415 mRNA downstream 111996 14713776 ~ 14725763 (+) True XLOC_022848
TCONS_00045416 mRNA downstream 200064 14801844 ~ 14810634 (+) True XLOC_022849
TCONS_00045417 mRNA downstream 257458 14859238 ~ 14884543 (+) False XLOC_022850
TCONS_00045418 mRNA downstream 257494 14859274 ~ 14885354 (+) True XLOC_022850
TCONS_00045419 mRNA downstream 335425 14937205 ~ 15107330 (+) False XLOC_022851
TCONS_00045400 other upstream 244440 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045390 other upstream 629521 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045382 other upstream 1527080 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045367 other upstream 2371800 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 2534108 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045413 other downstream 22051 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 33523 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045420 other downstream 418622 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045423 other downstream 811209 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045443 other downstream 1791747 16393527 ~ 16550549 (+) False XLOC_022862

Expression Profile

//