RNA id: TCONS_00045403



Basic Information


Item Value
RNA id TCONS_00045403
length 829
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_022842
representative True

Chromosome Information


Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14527935 ~ 14532069 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCCGTCTATGATCTGCATCGCTCTGCATTTCTTTACAAGTGGCACATTCCTGTATGAAGTGCAGTGATGCCGAAAAGCTCAGGAAAAACCAACACAAtttcatggcaatttgtaactttttcatttagtggctaattcacattatttcgtacaatctaattcgtacaatttgctTATTCTCACAAATAAGATGGATTAATACACTGGGGATTACCTGGAGTTATCGGAGCAATCGATTGCATACACATTTCAATCTCTatgccagtaaaaaaaaaaacgaggctACTAAAAAAAAATGCCACTTACAGCATCAATGTTCAGATGGCTTGTGACCATCAGTGTTTGATCACAAACCTGGACGCCAGATGGCCTGGCTCAATGCAGGACAACCAAATTTTcgagtcaaagtcaaagtcatgTCAGCTCTGGCTGTTTGAAAGTGTGTTGGTGGGAGACCGGACTTATGCATGCCAGAGCTTTTTGTTGACTCCCTATCCTGAACCAAAGACAAAACCACAGCAAGGGTTTACCATAGCCCAGTCAAACCAGGCTCAAGATAGACACAACTTTAGCCATTTTAAAGGCCCGGTTTAACTGTCTTCTTGACCTGAGAGTGTCACCCGAACGCATGTCTCAGATTGTGGGTGCATGTGCTGTCCTCCACAACATAGCCTCAATAAGGATGGAGCAGATGCCATGTGAATGCCAGTAATCCAATGATGATGTTGACTCTGCTTCCTGGGTCAATCTAGCTGGGAGGGCTGTCAGACATGCCATCACAGAAGAATATTTCATGCAACATTCAGTAAAGCAAAATTGacaacacaaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134846

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00046950 lncRNA upstream 449299 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00046949 lncRNA upstream 763131 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046948 lncRNA upstream 927663 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00045375 lncRNA upstream 1573455 12953835 ~ 12954480 (+) True XLOC_022826
TCONS_00046947 lncRNA upstream 1673743 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00045405 lncRNA downstream 9020 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA downstream 9212 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00045407 lncRNA downstream 21246 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00046951 lncRNA downstream 50175 14582244 ~ 14585809 (+) True XLOC_022845
TCONS_00045432 lncRNA downstream 1617371 16149440 ~ 16164447 (+) True XLOC_022858
TCONS_00045402 mRNA upstream 71832 14451404 ~ 14456103 (+) False XLOC_022841
TCONS_00045401 mRNA upstream 71832 14451404 ~ 14456103 (+) True XLOC_022841
TCONS_00045399 mRNA upstream 82798 14302503 ~ 14445137 (+) False XLOC_022839
TCONS_00045398 mRNA upstream 82798 14302503 ~ 14445137 (+) True XLOC_022839
TCONS_00045397 mRNA upstream 82990 14240196 ~ 14444945 (+) False XLOC_022839
TCONS_00045404 mRNA downstream 8944 14541013 ~ 14557158 (+) False XLOC_022843
TCONS_00045408 mRNA downstream 49795 14581864 ~ 14597298 (+) False XLOC_022844
TCONS_00045409 mRNA downstream 63391 14595460 ~ 14601780 (+) False XLOC_022844
TCONS_00045410 mRNA downstream 63611 14595680 ~ 14600218 (+) False XLOC_022844
TCONS_00045411 mRNA downstream 63611 14595680 ~ 14600256 (+) False XLOC_022844
TCONS_00045400 other upstream 176915 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045390 other upstream 561996 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045382 other upstream 1459555 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045367 other upstream 2304275 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 2466583 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045413 other downstream 91762 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 103234 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045420 other downstream 488333 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045423 other downstream 880920 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045443 other downstream 1861458 16393527 ~ 16550549 (+) False XLOC_022862

Expression Profile


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