LOC110523325 (LOC106569195)


Basic Information

Item Value
gene id LOC110523325
gene name LOC106569195
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16416981 ~ 16422022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601918.2
GTGCGTACATTACATAACAGGAAGTGTTTCACTATCGCCCAAACCGAACTGCACGAGAGTCCGATGGCCTGAAAGGACAGTGACACAACAGCAAATAACCCCTCTAAATTCGCACCAAACATCGTGTACATGAGATTTACAAGCCGACCAAAAATGAACTACATGCCAGGAACAGCCAGCCTCATCGAGGATATCGATAAAAAACATCTTGTCCTGCTCAGAGATGGAAGAACGTTGATCGGCTTTCTCAGAAGCATTGATCAGTTTGccaACCTGGTGCTGCAGCAGACGGTGGAGAGGATCCACGTGGGCAAGAGGTATGGAGACATCCCTCGAGGAATCTTTATCGTCAGGGGAGAGAACGTAGTCCTCCTGGGGGAGATCGACCTGGAGAAGGAGAGTGACACCAGTCTGCAGCAGGTGTGTATTGAGGACATCCTGGAGGAACAGCGACTGCAGCAGCAGAGCAGGCAGGAGGCAGAGAAGACCAAACACCTGGCCCTGAAGGAGAGAGGCCTGGTCATGCCCAGACCAGACATCATGGACGAATATGGAGTACAGCACCAATACTGACCGGTACATACAAACACGGTCAATAGGTAATGATCCAAGTTCACTGTCTTTACTTTACCTTTGAGAGTGAATCCCCAATGTACTGGGCACCTTATGACGAAGCACCTTATTTCACATTCAGAGTTTCATATTATGTTTCCCTAAGAGTATCATGGCACTGACATAAATGTACAGGGTTTTTGTTTGAACCATTCTTTTAAACTATTTTGTGAGGTGTAATGAAAACTACATTTTGATTTGTACAGAAGTGAAAAGAGGATTTATAAAAGTTGTACATCACTGGAAAGGCCTTTGTTTGTATTAAACACTTTTATTTTTTAGAA

Function

NR:

description
U6 snRNA-associated Sm-like protein LSm1

GO: NA

KEGG:

id description
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601918.2 True 896 mRNA 0.45 4 16416981 16422022

Neighbor

gene id symbol gene type direction distance location
si:dkey-34e4.1 LOC106569177 coding downstream 6728 16218314 ~ 16410253 (-)
LOC118964745 NA coding downstream 211979 16203690 ~ 16205002 (-)
garnl3 LOC106562762 coding downstream 295671 15938951 ~ 16121310 (-)
LOC110523317 LOC106568982 coding downstream 490338 15902216 ~ 15926643 (-)
LOC118964569 LOC106594099 coding downstream 517687 15898677 ~ 15899294 (-)
LOC110522841 LOC106569125 coding upstream 5481 16427503 ~ 16430780 (-)
ppiab ppia1 coding upstream 52068 16474090 ~ 16479578 (-)
LOC118964764 NA coding upstream 53175 16475197 ~ 16475278 (-)
LOC118964765 NA coding upstream 53755 16475777 ~ 16475856 (-)
LOC118964763 NA coding upstream 54657 16476679 ~ 16476760 (-)
G372773 NA non-coding downstream 52131 16364644 ~ 16364850 (-)
G372772 NA non-coding downstream 52887 16363875 ~ 16364094 (-)
G372761 NA non-coding downstream 73832 16342844 ~ 16343149 (-)
G372760 NA non-coding downstream 75277 16341502 ~ 16341704 (-)
G372758 NA non-coding downstream 76862 16339767 ~ 16340119 (-)
G372816 NA non-coding upstream 13990 16436012 ~ 16437300 (-)
G372876 NA non-coding upstream 157057 16579079 ~ 16579741 (-)
G372892 NA non-coding upstream 202073 16624095 ~ 16624702 (-)
G372901 NA non-coding upstream 223207 16645229 ~ 16646216 (-)
G372909 NA non-coding upstream 241623 16663645 ~ 16664178 (-)
G372123 NA other downstream 435766 15978502 ~ 15981215 (-)
G372122 NA other downstream 440865 15975606 ~ 15976116 (-)
LOC110523302 NA other downstream 718652 15693396 ~ 15707607 (-)
G371294 LOC106569911 other downstream 1292192 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 1421822 14988147 ~ 14995197 (-)
LOC110523341 LOC106569324 other upstream 512213 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 702015 17124037 ~ 17125807 (-)
LOC110523354 LOC106569496 other upstream 1067004 17483696 ~ 17521507 (-)
G374189 NA other upstream 1580798 18002820 ~ 18003170 (-)
G374786 NA other upstream 2136118 18558140 ~ 18559167 (-)

Expression


Co-expression Network