LOC110523515 (LOC106566295)


Basic Information

Item Value
gene id LOC110523515
gene name LOC106566295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26669887 ~ 26804113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977154.1
TCCTGCAGCCCTCTGTCTCCAGTACGAGACTGGAACACGCAACCACAGGGGTCCATAGGCGATGAACGGTGAAGATCTGGATAAACTGTTCACTAACAATGAACCGCGAAAACATGGGATAACAAGGCAAAACAAATTATAATTTATCCTCGATTCGGGATAGGAACAAGATAAAATGAATTTGTTGTGGGGAAACAATCATTCTTTCTTTTCTCTCATTTTATGCCATTCTCCTTGGAGGCTGAGCTGGTATAAAGATCTAGGAACAGCTGGAGCCGGTGATCATGGAACAGGGATGTTGTCATCTGAGTAAACGAAGTTAATCGATTATGGAATATATGGAAAAATCTTGACTTGAATAAGACAATGGAAAGTAAGTAGTTGGAGAGCCGTTATCACTTTCTCATCACACGGGAGTTCTATATCCAGAAGATCATCCGCTCAGGAGATGTCATATTTTATTCTGGAATAATGCAGAAGAGGCGAGACCGTCATCAAATATGATTCGTGTCTGACACATTCGCAGGTTTGAGTGATAAGCCTATTGCTATTGTTGACTATTAAATATATTGTCACTGCGAATCGGTAAAGAGGTGATAACACTTCAATTGTCCGTTTTTGAACTGGTTTAACATACCATTAATATGAATGGTATTTTTCTATAGTAGTTTCTCTAGGTACATTCAGATTTTTTCCCTGTCAGATACTGTATGATAGACGAGAAATAACGAGCCCTGTAGACTACTGGTGACATCACCCCAGTCAGATCTACTGCTGTACAGTAAATATCAACAATGGTAGAGCCTGTGGGATTTATTGAAGCATGGAAAGCGCAGTTCCCCGAGTCGGACCCCCCAAAGATGGAGCTCAGGTCGGTGGGGGGCATCGAACAGGAGCTGGAGAAGTGCAAAGCCTCCATCCGGCGGCTAGAGCTGGAGGTGAACAAGGAGCGCTTCCGTATGATCTACCTGCAGACGCTGCTGGCCAAGGAGAGGAAGAGTTATGACCGCCAGCGCTGGGGTTTCAGGAAGGCCCAGGTGAACGAGGTAGGGGACCAGGCAGGGCTGGGTGCTGAGTCTCAGCAGCCACACGTGCAGGAACAGGGGGAGCGGAGCCGGTTCCAACCGGTGGGGGAGGCTAGGTCCAAACCTAGACCCCCTCCAGCCCGGAAGTCAGCCTCCCACGGAGACGGGCTGGAGCTCCAGTCTGCCTTCGAGGTACCCCAGCAGGTAGAGCCCTGTGAGACAGACGGCCTCTCACCCTCCAAACAGAAAGGAGGTATATCCCCTCGCCGCCAAAACCCACCCCCAAACAAGGACCTACTGTCTGACCCCAATGACAAGCTTGGCATGGGACTGGGGGTGGCAGCGCTGAGGTCTAACTTTGAGAGGATCAAGCGGGCAAACTCTCACTCTGccggggatggagggaagagccAGGAGAAGCAGCAGCCCTTCTACACCAACATGGACTTCCACCATGACAGGGGCCTGGTCAGGGTCAACGACCGAGACGTCTCTGACAAGATCAGCACCCTGGGCAGCCAGGCCATGCAGATGGAGCGCAAGAGATCTCTGCACTCCCTGCCAGGCAACTTGGCCACTGTGGCAGGTGAGCTCCGCACTCGGCCTGTCTACAGGGGGCGCTCTACAGAGAGCACCTGTGGGTACGATGCTGAATACGAGGATGGGGACCCCAACCCACGCCACCCCAAGGCCAACGGGGGCAAACAGCCCCCTCCACCCCCATGGCAACCCTCTGACTTCCAGCCATACACCAGTGTCTACGTGGGTGGGGTGATGATGGGCGAGGGTGGGGGGGATGGAAGAGGGGGCGTCATCATGAGGGACCACATCGGAGAAGAGCACCACCTGACCTGGCCCCGGCGCTCCTACTCTCCCGGGAGCTTTGAGGACGTGGGGGGCGGAGGCGGCGGCTACACACCAGACTGTAGTTCCAATGAGAACCTAACATCCAGTGAGGAGGACTTCTCGTCTGGCCAGTCCAGCCACGTGTCACCCAGTCCCACCACTGCCTACCGCCGGCCCTTCAGGGAGAAGAGCCGCTCACCCTCGCAGAACTCCCAGAACTCCCAGCATTCGTTTGACAGCAGCAGTCCCCCCACGCCACAGTCCCAGAAGCGCCACCACCAGCAGGGCCACGTGGTCATGTCCGAAGCTACCATTGTGAGCGTCCGCAAGACTGGCCAGATCTGGCCCCCACTCGATCCGAACTCCACACCGGCCAGCAGAGCCTCCCATGACAACAGTTTCCATGGAGACCTGGATGGTCCATTCACGGGGACCCCTCCCACTTACGGGTACGATGCGGACCGTGCGGAAGAGCAGAGGCGCCACCATGACATCCTGCCCTACATCGACGATTCGCCCTCCTCTTCGCCACACCTCAGCTCCAAGAGCCGTAGCAGCCGAGACACCCTCTCCTCCGGATCCCTTGAGTCCTCCAAGTCgACGGAGTTGGACCTAGAGAAAGGCCTGGAGATGAGGAAGTGGGTTCTGTCTGGGATCCTAGCCAGCGAGGAGACCTACCTAAGCCACCTGGAGGCACTGCTACTGCCTATGAAGCCTCTGAAGGCAGCAGCCACCACGTCCCAGCCCGTGCTGACCATCCCCCAGATCGAGACCATCTTCTTCAAAGTACCCGAGCTCTACGAGGTCCACAAGGAGTTCTACGACGGCCTGCTCCCCCGGGTGCAGCAGTGGAGCCACCACCAGCGCGTGGGGGACCTCTTCCAGAAACAGGCCAGCCAGCTGGGAGTTTACCGGGCCTTTGTGGACAACTACGAGGTTGCTGTGGAGACGGCTGAGAAGTGCTGTCAGGCCAACACGCAGTTCGCTGAAATCTCTGAGAACCTCAAGGTGAGGAGCACCAAGGACGTGAAGGACCAGTCAGCCAAGAACTCTCTGGAGACTCTCCTGTACAAACCAGTGGACAGAGTTACTCGTAGCACCCTGGTACTGCATgacctgctGAAGCACACGCCCTCCAGCCACCCAGACCACCCCCTGCTCCAGGACGCACTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGAGACCACGCCCAGACGCCAGTCCATGACTGTCAagaagggagagAACCGCCAGCTGCTGAAGGACAGCTTCATGGTGGAGCTGGTGGAGGGAACCAGGAAGCTCCGCCATGTTTTCCTCTTCACCGACCTGCTGCTCTGCGCCAAGCTCAAGAAACAGATCGGAGGgAAGAGTCAGCAGTATGATTCCAAGTGGTACATCCCTCTGTCAGACCTAACCTTCCAGAACGCAGATGAGTCTGAGCCTCTGCCCATCCCCCAGGTGCCTGACGAGGAGCTGGACGCCATGAAGGTCAAGATCTCCCACATCAAGAGtgagatccagagagagaagCGAGCCAACAAAGGGTCGAAGGTGATTGACAGGTTGAGGAAGAAGCTGTCGGAGCAGGAGTCTCTTCTGCTGCTCACCTCCCCCAGTATGGCCCTCAGAGTACACAACAGGAACGGCAAGGGTTACATGTTTCTGATGTCATCAGACTACGAGCGCGCTGAGTGGAAGGAGACGATCCAGGAACAGCAGAAGAAATGCTTCAAGAGCTTCTCCCTGACCTCCATGGAGCTACAGATGTTGACCAACTCATGTGTGAAGCTGCAGACTGTCCACCACATCCCACTCACCATCAACAAAGAAGGCCAAGAGGATGAATCCCCTGGCCTCCATGGATTCCTGAATGTAATCGTCCACTCAGCCTCGGGCCTCAAACAGAGCTTGAaTCTGTACTGCACGTTAGAGGTGGACTCCTTTGGCTACTTTGCGAACAAAGCCAAGACGCGGGTGTATCGCTATACCACAGAGCCCAAATGGAACGAGGAGTTTGAGATAGACCTGGAGGGCTCTCAGACCCTGAGGCTGCTGTGTTATGAGAAGAGCTACAACAAGACCAAGCAGAACAAAGAGGACGGAGACAGCACCGACCGCATCATCGGCAAAGGACAGATCCCGCTTGATCCCCAGACGCTCCTAGGCAAAGACTGGCAGAGAACGGTCATCCCCATGAccgggATGGAGGTAAAGCTTTCTATGAAGTTTACCAGCCGAGAGTTTAGTCTGAAGAGGATGCCGTCACGGAAACCCATGGGCGTGTTCGGAATCAAGATTTCCACAGTGACCAAACGGGAGCACTCCAAGGTGCCCTATATCGTCAGACAGTGTCTGGAGGAGATTGAgcggagggggatggaggaggtggGCATCTACCGAGTCTCAGGGGTGGCTACAGACATCCAGGTCCTGAAGGCTGCCTTTGACACCAACAACAAAGACGTGTCTGTGATGATGAGTGAGATGGATGTGAACGCCATTGCCGGGACTCTGAAGCTGTACTTCAGAGAGCTGCCAGAACCCCTCTTCACTGACGACCTGTACCCCAACTTCGCAGGAGGCATTGcCCTGTCTGACAGCGTTGCCAAAGAGAGCTGCATGCTGAATCTACTGCTGTCACTGCCAGAACCCAACCTGGTCACATTCCTCTTCCTTCTGGATCACTTGAAgagGGTGGCTGACAAGGAGAGCATCAACAAGATGTCCCTCCACAACCTGGCCACGGTGTTTGGCCCCACCCTGCTGCGGCCTGCAGAGAAGGACAGCAAGATCCCCACCAACCCCACGCAGCCTATCAGCATGGGAGACAGCTGGTCCCTGGAGGTCATGTCACAGGTCCAGGTGTTGCTGTACTTCCTCCAGCTGGAGACCATCCCCACGCCGGACAGTAAGCGTCAGAGCATCCTCTTCTCCACCGAAGTGTAGTGTTCCACAGGTTCCCATCATGATGAcaatgggagagagaggctgtgataGAGACGTCGACTCAAACTGAGTCTACAGTATGTCCATTTGGGAAGGCTACTGAGAGTGAGAATGGCCTTTGCTGGACTGCAGCAGGAGATGTATTCTGCACTGATTCTGGACATAGCTTGCAGAGGGCGCCACCATCCCTCTGAGAACAAGAGGGTGGACACCAATCCTCTGTTGTACCACACATATCTGATGATGATAACGCATTAATACATCACACCCAATAGCCAGTGTGACTCTTTGTGCCTCTCTGATGCATCATATCCTCCTCTTCTCGCTCTGTCTCTTCGCTCTCATGTCGAAGCTCCACAGCTTGTGTACGGTGTACGGAATGAATGCCACTATTGAACATGCCTGCTGCAACCCTAAATGAAACACTTCAATTTGAGTCTGATCAGCATGTAGGGGAAAAGAGTGTccaaggtttttattttttttgttgctattgGCTCCTGCTTTGTAGGCAGAAAAACAAGCAGGGCCTGCACAGCGTTTTGTTTAGCCTTTTCAAATGTTGAGTTATTTCTTAATCCACTGCTGAAGAGATTCCAGCCGTATGTTTTACACATGATACATTAGGACCACAATGCTACGAGAGTTATGTTGAAAAGGAACATCTGGGTTCTCTGAAGACTTTTAAAGAGGAACATCCAGAGCTGCCAGGATCACCAGTCTATTTGTGCGTCCCAGGAATCCACCACTCACGACAACAACAAAGTGTTTACAAGGTAAACAAACCTTGGACAAAGGCAGAGACGAGGAGACTGCAACAAAGGCATTTGTGAAATAGGAACAGTTGACAGAAACAGAGTATCTATCAGTTATAATAAGACTGCCTACAGTTTGGACCATAAAGCAATTCCCTCTATTTGTGTTCTTTGTGTTTCAAGTAGTCCTCAGCTTAAATACCCAGGAAGCAATAGATTTTCTAACATAGGAGTTTGTCTGCATTCATATCCTTAGTCCGGGGATGTCCTCATGGTAACATAGGAGATCTTGCCAAAATGATCTGTTGTTTGGGAAAAAATTAAACTATTGTAtttacagatacagtacagtatgtacataatGCTGTAATTGTTGTATTTGTTATGATTATAATTTATGAAGAAAAAATGGGGGGGTGGGGcagaaatcaatgtttttttttctatgtGCTTGTTTTGATTTGATGAAGGTGGTATAGGTTACAGACTTGAGTCCTGGAGGTCTGAGGTGATGGGAGATCATATGCTGCCTATGTAACCAGGATGTAGCCTTGTTGTGGGAATAACTGCAGTTTTGTCCAGCCTAATGTTAGCCATGTATCCATCATTAAGGTAACACTCCATCTTTGAATGCCAATGTCCCAACCCCTCTTCATCTGTTCGAGTGTTCTAGTCCCTAACCACCCACCCTGAAATCTTGATGTGTTACTGAAGTAGGATACAAAACAGTACATTTAGTTGTATACAGAACAACAATACCATGTTTCTTCTCTACAATTTACAATAATAACATGTTCCCTTTCTACAACTTACAACAATACCATGTTTCCGCTCTACAGCTGTGTCGGTGGAGACAGTTATTCTCATGAAAATGAAAATAATTCACCTGTTTCAAACAAGTTGCGCTAAATTGTGGATGCTTAGCCAAAGTGGACCATTCTGTTGATGTTATGAAGGAATACTTGTTTATCCTCTTTTCAATGAAAGTGACCCATCTGTTTCTCACCCATATTTGTGAGGTTGGCTGGACAGCTGTCATTAACTGTCCTCCACACCCTTCCTTAAGCTCTTCTCCCTCCTGGTCTGCCTCATAGTAACCCACCAAAGGGCCATGGAAAAGAAAATGCTCTTAGAATATTTTGTTCAGAAGGAAAAAAGAGAAGATTTATATTAGAATGGTTTTAATTTCAGTACCTGTAGGCATGTTTGATTCAAGTTATTTTCATCTGTGTGTTGTCATAAACATATTGTTATATTGGGCAGCAGGATGTTAGTGACCAACAAGTGTTTTGGTTTTGATAAACCAAGCTTAAAATATGATATTTCATTCTGGCTGGATAATTGTTAACAAGTAATGTGTTTACTAACTCAGTCTGTACTACTGTCTGCACTACTGAGATTTCATGAAGAACTCTGACATTTTGAAGTTAGCAGAGACATTTCCGACAGTTTTGGGGTTGTACATGCAACATTTGTGCGCACACatgcgtgagtgagtgaatgaaataATGGGATGatttgctgtaaaaaaaaaaaaagtagaatTAAGACATAACGTTTCAAATCCGGACTTATCCATATGCTAACATATCAACTAAATCAGCTCCAGTTAATAGCCATAGTCATAACTTTAGTAACACATTTTGTCCTAATATATCCTCACATGTCCCATACACACAACTGTACAATGGAGGAAGCCATGAGAGAGAAAGGCAGTGCATTCACCATTCATTTAGATCTCTTTGATTTATATCATTAGTGCTCAATGTGACCTGCTCTGCTCCATTGTGCCTCTGCGTCACAGCTTTTATTCAGAACGTATGCCGTGGATTTCAATGTGTCAGTGGAATTGCTGTAAGGAGACTTACTGGGGTGCTGTAGTCTCCCTCGCCTTTTGAGAAAACAGACCTGTCCTTAAGGCACCTATTTTGAGACCAATACATGAACGTAGAGTTTGGTATCGCACTTCATGGCACTATTAGCCTGTGTGGGAGATCTTGTCTGAATATTATGATACCAAGCTAAGCCCAATTCATGTTTGCAATcataggagacagacacacagatgcTTAGTCAATAACCCTCACTCTGCCTTAGCTCTGTCAACATTAGCGAAATAACTCATTTTCAGCTTTTCTGTTCCAGTTCTGTGTAAAATGAAGTCTACTGTATTTACGGAGCTGAATACCCTCATCTGAAGGAAAAATATATTAGTAGTAGCAAAGTGGTATCTATACTTGTAGAAGGAGGACACTTTCAAAATTCACTGTCATGCTATATGACTCATATATAGATAATATCTCTCAAGGCTCTATGCTATGCTGTGTATCGTTCATTTGCAAGATGTACTTTGTTTTTTCAAATAACTGCCAAACAGTTTGTAACCATCTGCTGTCCTAACTGTaactactgtatgtatcaacaTGTCACTAATCCAAAACATGATCTAATTTGGAGGGGCTTGCACTTACAGTTCCTTTTGGTTTTACTCCAGACTGCCCACTGTGATGCTTTAGGACATTTTCTGTGGTTTGGAGAGAAAAGATTGCAAGGAAAGATGAAGGTTATTTGAGTTTATATAGGTTAGTCATCTCTCTAACCTTGTCTTATGGTTGTAcaatatgtattgtatgtatcatACTAGAGGCATTGGGTTCTTAGGTTTATTTATTGTGATGTTCATCAATACATTTAGGATTAATCATGTTAATAAAACAGTTGAGTAATTAGGCTTCAACTGAACGAGAACTTGGTTATTGATTGTCAGTGTGATTCTTCACAGGGCTAGTCACTTACCCTGCCTCTTTCATAACGAAGTCATATATGTCAACATAAGATTATTCTAAATATGTGTACTATGTTTTAAAGTCTAAAAATATGGAATATATTACTCTATGTACGACTTTAGCATTTCAGTGTATGCATACTGTATGATGAATGAATATTCATTCTTTCAGTCCTTGTAAGTTGACATGAGCCTGGCAATAGTTTATTATAATTCACTCCCTTATTAAACGTATTTTAAATGACCTGAAACCATGTTTTGACATCTTGGGAATATGTGTGTTTTATTCCACATTTTCTAGTTAACTGTGTGAAGCTAAAATGATGGTACTTGCTGGTcatccacaaaaaaatacatttgacctTTTTTCTGTTTTTCAATTTAGATTTATTTCCTTCTGGTCAACATACATGTTATGTCATGAGTCTGTAAAAAGGGATACTGTAGTCTGAGGAAAATACATGTTTGGAAGGCATTGGCAGCCTCTgtacacaaaatgtataataaaatcagtatctatgtaaaaaaaaa

Function

NR:

description
breakpoint cluster region protein-like

GO: NA

KEGG:

id description
K08878 BCR1, BCR; breakpoint cluster region protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977154.1 True 8900 mRNA 0.47 23 26669887 26804113

Neighbor

gene id symbol gene type direction distance location
LOC110523516 LOC106563144 coding downstream 73 26629389 ~ 26669814 (-)
LOC110523514 LOC106566259 coding downstream 45787 26593074 ~ 26624100 (-)
snrpd3l smd3 coding downstream 94841 26572932 ~ 26575046 (-)
LOC110523513 camkk2 coding downstream 97099 26550406 ~ 26572788 (-)
zgc:113162 LOC106566205 coding downstream 119987 26518130 ~ 26549900 (-)
LOC110523517 LOC106566303 coding upstream 6653 26810766 ~ 26855179 (-)
LOC110523523 ub2g1 coding upstream 91129 26895242 ~ 26898873 (-)
ulk1b NA coding upstream 97664 26901777 ~ 26937060 (-)
mmp17a mmp17 coding upstream 158888 26963001 ~ 27064380 (-)
LOC110522882 sfswap coding upstream 336397 27140510 ~ 27281507 (-)
G384313 NA non-coding downstream 31402 26637869 ~ 26638485 (-)
G384310 NA non-coding downstream 34810 26634609 ~ 26635077 (-)
G383720 NA non-coding downstream 156463 26513165 ~ 26513424 (-)
G383696 NA non-coding downstream 177659 26459766 ~ 26492228 (-)
G384440 noc4l non-coding upstream 73380 26877493 ~ 26879509 (-)
G384441 noc4l non-coding upstream 76313 26880426 ~ 26881312 (-)
G384443 vps29 non-coding upstream 82376 26886489 ~ 26887091 (-)
G384464 NA non-coding upstream 137279 26941392 ~ 26941877 (-)
G384473 NA non-coding upstream 146673 26950786 ~ 26951277 (-)
G383422 NA other downstream 671107 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 1228093 25437411 ~ 25441794 (-)
G380648 NA other downstream 2908080 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 2957996 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 3113344 23488916 ~ 23556681 (-)
G385617 NA other upstream 1205154 28009267 ~ 28010077 (-)
G385769 NA other upstream 1410430 28214543 ~ 28214819 (-)
G386126 NA other upstream 1547662 28351775 ~ 28354745 (-)
G386222 NA other upstream 1686853 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 2199570 28994099 ~ 29004755 (-)

Expression


Co-expression Network