mmp17a (mmp17)


Basic Information

Item Value
gene id mmp17a
gene name mmp17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26963001 ~ 27064380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602292.2
TCCAATGCTCCGCGCAGGGAGCGCAAGCCTACCTCCGTTTGCCGGTATTGCAGTGTTGCAGCGGGGATATTAATTGAACGGATTCATTTTCTTTGCCCCGTGGGTATCTTGCACATTCTGAGATAAATAGCCTACATACTCCTATGCCTGGAAATATAAGTTATATGTCTTTGTAAATAATTGTCGGCGTAATGTGGTCCACTGAGGAACAGCAATAGCCTATGACTGAAATGTTTTTTCAGGACGCGGATCTTGGTGGAAACTAACTGCAAAATTCCTCAATGTTTTTATTGGCATCTTCGGCTCTGTGTGATATGTGTTTCATGTGTTTACGCGCAACAGTGAGGTAGACTTCTCTTCCATTCCGTTTTGGAAACGGATGCGAGGGATCCGGACCTGGGTGATTTATTTGGTGGTGCGGGGGCAGGGACCCGTGTCTGAGCGCTGCATGAGCAGCGAGTGGCAGGGCATGATGTGTCAATTTTTTCGTAAATGGAAGTCCGTGCGGCGCGTTTGGATTATTTCCCCAGAGATGCTCCTGCTGCCTATGTTTTGGTTTTTATCTCAGGCTCGAGCGGCACCCTCTCTGACGGCTGAGCAGATGGACATGGGGGTGGATTGGCTGAGTAAGTATGGGTACCTCCCGCCCCCTGACCCAGTGACTGGACAGCTCCAGACCAAGGAGGCCCTGACCAAAGCCATCAAAGCCATGCAGAAGtttggaggactggaggagactGGGgtgctagACCAAGCTACCCTGGGCCTGATGAAGACCCCGAGGTGTTCTCTCCCAGACCTGTCTGAGACGGAGGTGATGGTGGGCCGCAGGAGACGAGCTCTGGTCGCCCAGAACAAGTGGAACAAGAGACACCTCTCCTGGAGgatACGTACCTTTCCTAAGGAGTCTCCTCTGTTGGGTCGAGATACGGTACGGGCTCTCATGTACTATGCTCTCAAGGTCTGGAGTGACATCTCCCCCCTCAACTTCCATGAAGTGGCGGGCAACGACGCAGACATCCAGATCGACTTCACCAAGGCTGACCACAACGACGGGTACCCCTTTGACGGGCCGGGGGGCACTGTGGCACACGCTTTCTTCCCCGGAGAGAGGTTCACAGCAGGGGACACCCACTTTGATGATGATGAGGCCTGGACCTTCAGATCACCAGactCTCACGGGATGGATCTGTTTGCGGTAGCAGTGCATGAGTTTGGTCATGCTATTGGCCTGGCCCACACTTCAGCCATAGAGTCCATCATGAGGCCGTACTACCAGGGCCCTGTGGGGGACCCACTCAAGTACAACCTCCCCTATGAGGACAAGGTCCGTGTATGGCAGCTCTATGGGGTGAGTGATTCAGTGTCACATACGGGCCAGCCAGGTGACCCCTCCCAGACCGCTGACCCACCTGTACTACTGGACCTCCCTGAGAACAGATCTACTGTCCCgCCAGCACGAGATTCCCCTGACAGGTGCACCAGTCACTTTGATGCAGTGGCCCAGATTCGCGGGGAGGCCTTCTTTTTTAAAGGGAAGTATTTCTGGCGTCTGACGCGGGAGAAGCACCTGGTGTCTCTGCGTCCAGCTCAGATCCACAGGTTCTGGAGAGGCCTGCCTATCAACCTGGACAGTGTGGACGCTGTCTACGAGAGACCTGGGGACCACAAGATAGTCTTCTTCAAAGGACTAAAGTATTGGATATTCAAGGACAACAACGTGGAGGAGGGTTATCCTCGGCCAATCAGTGACTTTGGCCTGCCCATGGAGGGCGTGGACGCAGCCTTCGTGTGGCTCCACAACGACAAGACCTACTTCTTCAAGGACAACCACTACTGGCGCTATGATGACCATCTACGGCGTATGGATCTGGGCTACCCCAAAGACAGCACACTGTGGAAGGGGGTCCCGCCCCAACTAGACGACGCCATGCGATGGTCGGATGaTTCCTCATACTTCTTCAAGGGGAAGGAGTACTGGCGCGTGGTTGGCAGTGATATGGAGGTGGAGGCTGGGTACCCACGGCCCATAGGAAAGGATTGGCTGGTGTGCACAGAGATGCAGTCGGACTCCCCAGCCACAGAGGCCAATAACACAGCTAACACGCGGCTACACGGGCAGCACCACGCCGACCATGCCGAAAATGGCTACGAGGTATGCTCCTGCACTTCTGACTCTGCTTTACCCCTGGGAGCCCGGCCCTCGCCCTCCCCCCTCTGGCTGCTCACCCCTCTCTTGACTCTCTCAGTGGTACAATCCTACGCCCCTCTATGATGTAAGTAGAGGTGAGCAGCCTCACTCTGTGACATGAAGTACAGCAGCCAATCTGATGAGAGTGGGGAAGTGGCTTAAGGGGTACTGTCAGACCAGCTCCACTGTCCGACAAAACGATGACTGGAGGAATTagctgttattgttattattatcttAATTGGGATCCTCggtgtttatttgtttttttgtgtttttgttatTTATTATATTCAATGGATCAACTTGCTTTTAAACTATTTATGTTAAAATTATGATATTGGATTGAATTAGAAATGTGATAACATGACAAATGGAAATAGTTTGTCAATTTGATTATAGTTATGATAAGTTCACAGCAAATGAGTTCCTCTGTGACTAAGCAGTCTAGCAAGAGAGTGGTACTCTGGGATGACGCACGCCCTGTCCCCTTGTTCCTGCAATCACTATAAGTGCTTTAAGAACCCTCGCACATACACAGACCACTCCATGTGCGGTTTCTATGGACTGAGCTAGCTGGGAAATAATGTTCCGTCTCTGCTCACTCGCTCAAATGGGAATGTCTGGTCTGGCCGGATGGACACTACGCTCTCATTGGACAGCTTGCTCTCTCACTGAGTTTTTAATGTCAAGACTATCTGGATGGAATGGACACTACTTCCTGTAATGACACTGACTGTCCTTCCTTGACTGCACTCACGTGCCCTTTTGTGACCTTTGCACCTgtatctttcttttttttctcagcTCAGTAACAGTAGCACCTCCTGCCGTTATCAGAGAGGGTAACCTGTTAGTATTGATTATTAGGACGTATTTTTGTAATAAACACAGAGGGATTGTGGTTGGGCCCTA

Function

symbol description
mmp17 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within drinking behavior and kidney development. Predicted to be located in extracellular matrix; extracellular region; and plasma membrane. Predicted to be anchored component of membrane.

NR:

description
matrix metalloproteinase-17-like

GO: NA

KEGG:

id description
K07997 MMP17; matrix metalloproteinase-17 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602292.2 True 3106 mRNA 0.51 10 26963001 27064380

Neighbor

gene id symbol gene type direction distance location
ulk1b NA coding downstream 25941 26901777 ~ 26937060 (-)
LOC110523523 ub2g1 coding downstream 64128 26895242 ~ 26898873 (-)
LOC110523517 LOC106566303 coding downstream 107822 26810766 ~ 26855179 (-)
LOC110523515 LOC106566295 coding downstream 158888 26669887 ~ 26804113 (-)
LOC110523516 LOC106563144 coding downstream 293187 26629389 ~ 26669814 (-)
LOC110522882 sfswap coding upstream 76130 27140510 ~ 27281507 (-)
LOC110522892 LOC106563163 coding upstream 700475 27764855 ~ 27944738 (-)
LOC110523530 LOC100195848 coding upstream 953366 28017746 ~ 28041548 (-)
LOC118964545 NA coding upstream 979586 28043966 ~ 28045743 (-)
LOC110523532 LOC106566453 coding upstream 1011400 28075780 ~ 28080536 (-)
G384477 NA non-coding downstream 7765 26955005 ~ 26955236 (-)
G384473 NA non-coding downstream 11724 26950786 ~ 26951277 (-)
G384464 NA non-coding downstream 21124 26941392 ~ 26941877 (-)
G384443 vps29 non-coding downstream 75910 26886489 ~ 26887091 (-)
G384441 noc4l non-coding downstream 81689 26880426 ~ 26881312 (-)
G384573 NA non-coding upstream 26782 27091162 ~ 27091369 (-)
G384576 NA non-coding upstream 28572 27092952 ~ 27093197 (-)
G384578 NA non-coding upstream 33992 27098372 ~ 27098642 (-)
G384580 NA non-coding upstream 35524 27099904 ~ 27100107 (-)
G384588 NA non-coding upstream 45578 27109958 ~ 27110163 (-)
G383422 NA other downstream 964221 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 1521207 25437411 ~ 25441794 (-)
G380648 NA other downstream 3201194 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 3251110 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 3406458 23488916 ~ 23556681 (-)
G385617 NA other upstream 944887 28009267 ~ 28010077 (-)
G385769 NA other upstream 1150163 28214543 ~ 28214819 (-)
G386126 NA other upstream 1287395 28351775 ~ 28354745 (-)
G386222 NA other upstream 1426586 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 1939303 28994099 ~ 29004755 (-)

Expression


Co-expression Network