LOC110522892 (LOC106563163)


Basic Information

Item Value
gene id LOC110522892
gene name LOC106563163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27764855 ~ 27944738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977176.1
CCATTGCTGCAGAGTGGTGAGAGGAGCACGATATTAATTAAACTCTTTCTTAAATTATTTTACACACAAAAAGTATAACTATTAAAAGAATGATGGAATCTTATGATAGCCCAATCTTCATATTGATTAATCTCAGAGAGCGAAATAAACGAATTTCTCTATCAGAATGTAGCTGGACACAATAGCCGGATAAAACATCTTAGCCTATACTGTGACAAGAGCATTTTCCCGCTGAACATCTGAAGAAAACGTGGAGGAAGAAATTATTTTGTAAAAATTATGTGCATTGTTTGTGACCCTCGCCGTATTCTATAGACAGTAGCCTAACACGCGCAAAAGAACAATGGACCATGTGATATCCAGCAGACAACTAGGTCTACTGAGGAAATTGTCATAAAACGAAAATTATATTTGAGTAATTCTAAATTGAAGATAGTTTTCATGAGGTGTTTTTACAATAAAGGTGGCCAATAAATATAACGTGGTGCAGCGCGCTTAGGGTCTAATGTGGAGACCACTGATGCACCCTCCGGTAAAAAAATTTGGGCGCACGGTTTCTCGTGTTATGTCAAAGACCTGCGTCAAGAGGTTCAACTGGTGATGTCGGAATCATAGTCTGCGCAATGGACACAAATGTGAACAACGGTCAATACAATTTACACTCGGTAACTCTCTAAACCGGGCCATTAAAAtcttaaattaattaaataaacaGTTAAATTAAGGATACATTCTAGTTTATTGCATAAGGGTTGGATACTGGCACGGACCGTTATTCCCCTGGAGTTTCTCAGTTCCCTCCTCAGCACCAAGACATTTCGCACTGTTTGGGTACCTGTCGTGCCAGGGACGGCTGTTGACTGTCGGACTTTCGTCAGCTTTCAGCGCTTGTACTGAGGAGATTCATCAATTGTGTAATTCATGGAAAACGTGTATCCTGTTAATTTTTGAAAGAGACAAGAGAAAAGTTGTGCGCAAAGTTCTGGCTCCTTCCCTCCGGAGCGTCGTTAGGGACCAGAGTCGTCCCgccttttttcatttttttgtacGTGTGGAAGTTTCTGAATCACCGGAAGGAAAGATGACTCTACTTTGCACAGTGGGGTTTGCGGTGGTCGTTCTTTGCGGAGtggCAGACAGCAGGGTGATTCTTGATGGTCTACAGAGGTACGGCCCCATGCCCGGCTACCTGCCTGTCAGCTACCAGGTACTCAATGCCAAGGCAGCCTTCTTCCTAAAGGAGGCCAACCAGGACCTAATGAGGAACTCCAGCCTGCAGGCCAGGACTGAGCCCTTCTTCATCCAGGAGGCCCGCCAGATGCCCTTCATCAACGCCAGCTACGGACCCATGTCTGCCCAGCAACCCATCCCCCTGGAGCTCCTACAGAGCCCCGGACCCTTCAACGGACCCTCTTTTACCTCCctgtcatcctcctcctcctcttctccatccctttTCACCTACAACTGGAAGGTCCATACCTTCATCATCAGTGAGAGGATTCACCCCAGTTGGCCAAAGGTGCAAGTGTTGTTCTATGTgggaggcagggactgggatgaCTATACCACCATCCACAGGCTGCCCTGTGTCAGGATGTTTGCCTTCCACGAGACCCAGGAGGTGCGGGGCACGTGTCGTCTGAAGGGGGAGCTGGGGATGTGTGTGGCAGAACTGGAGCCCCTGGCTAGCTGGTTCAGTCCCCCCACCGTGAGGCCAGGGAGGCAGAGATCTCCGGAGCAGCCCCAGGGCACCCCCGTGGAGCTCTACTACATGGTACAGTCCACGGAGACTGGGGAGTGCAGCTCAGAGGACTCAAGGAAAGGCAGTTCCATGCGCACAGAGCACCAGGGGCCCATGGGGTACTTCTCGGGTCCCACACCCATGCAGCGCATTGGGAGCGTGCGTCTGTTCCAGCCCATGCCGGAGCTGAGGCTGGACAGTAACTTTGTGGTGATGGTGCCCTCTAGACCAATCAGACAGAGGGAGATAGTCTCCACTTTCCTGGCTCTCTCCATCCTGTCACCTGTACAGATCTTCACCCTCAGagtGAAGTCGAAGGATGGCGTGGCATTCCTGGGGGCGAGGGCCAGTGACCCAGTCCTGTGGACAGTGAGTCAGGACGTGAGGAGCGAGGGACACAGGGTCATCACCCTTCACTGTCACCGCAAGGAGAACACCTTCGGTCAGAGGCCAGAGACGGGCTACCAGAAGGTCCTCCAGGTGGATCTGGAGGTGAACGGGCTGCTGGACCCGCAGGGCAGCCGGGTGGTGACGTGGCAGGTGGAGTACCCTCTAACTCGCTCCCTCACTGACGAGGTCCAAACCCTCATCCGCCTGGCACCACAGGACCTGGGTGGCATTGTGCCACTGGCCATGaACACTGAGATCCTGAATACAGCCGTCCTCACCGGGAGGACGGTTGCTGTGCCGGTAAAAGTGGTCACCGTAGGAACAGACGGCACGGTTACAGATGTAACAGAGTCGGTGGAGTGTCGGTCGACCGATGAAGAGGTGGTCAAGgtGTCAGATCGTTGTGACTATGTGTTTGTTAATGGGAAGGAGACGAGGGGGAGGATGAGGATGGTGCTCAACTTCACCTACAGCTACCTGAGTGCCCAACTGGAGATGAGTGTGTGGATGCCCCGCCTCCCCCTGCTTATCGACATAGCCAACCCCGAACTCAGCCAGATCAAGGGCTGGAGAGTCCCCGTGGCCGCCGGCACCAAGAGGTATGAGAGGGTGAGTGAGGATGATGGTGATGAAGTGgacagtgagaggacagagagtggcTGTGTCCCTCAGTACCAGAGCACCACGGTGCGGGTCCTCACACACTTTATGGCCCTAGGAGCTGATGGGCTGGGCCAACAGGACTTCCTGCTGGGCAGTGATTGGCAGGTGGACGTGACTGACCTGGTCCAGGATTCGCTGAGGGTGGAGGACCAACGTGTGGCCCGCCTACTGAAGGGACAGGTCCTGATGGGACTCAGCACCGGCATAGCCAAACtacagGTGATGTCCCCTCTGTCTGACTCGATCCTGgctgagcggatggtcagggttCTGGAAGACAAAGTGAGTGTGACAGAGCTGGGAGTGCAGCTGGTCTCtggcctctctctgtccctccagctCAGCCCAGGGAGCAACAGGGCCATCGTCGCCACGGCTACAACACAGGAAGTCATGCAGAAACTTAAACAGGAATCTCTTATCAGTGCCTGGCTTCAGTTCAGTGACGGCTCCATGACCCCTCTGGACCACTATGACCCCGCCCACTTTGTGCTCACAGCCACCTCATTGGACGAGCAGGTGGTGTCAGTACAGCGCAGTACCGAGTGGAAGTGGCCGGTTATCGTGGCAAAGGGCGAAGGTCAAGGGTTACTGGTGCGCGTAGAGATGACATCATCAGAGATCTGCCGGAAGACGAAGCGACGCATCATCCTGGCAGCCGGGGTAGGAAACATCAGTGTCAGGTTTGGCAGCGCTGAGGAGCTGTACAGCCGCCCCGGAGGCAGAACCCGACCAGACGCGCCCTACTACGGAGGCTCCATCTCTGACATTGAGGCTGGAATCATGAATCGGGACGCTACCACGGTTAAGGCCCCCATCCCGGTGAGGCCCAACGGGGACAGGCTATTGGCCGACGGAGGAGTCCCTGGAGAGTTCTCTGAGTTCCCTGCCCAGGCGGAGCTGCCGCGGGGCCACAGCACAGAGGAGGACCTGTTGTCGTCCCGCCGTGGCCTCACAGACCTGGAGATCGGTATGTATGCCCTGCTGGGGGTCTTCTGCCTGGCCATCCTAGTCTTCCTCATCAACTGCATCTCCTACGCTCTCAAGTACCGCAGCAAGGAGCTGCCCCTGGAGGCCCCTGAGGCAATGCCTCATGCCCACGACTGGGTGTGGCTTGGCCAGGATGAGGGCCTGTgcctgcagcagcagcaggacgAGCTGGGCTCAACCCTGGAGGAGGGCAGCCAGCTGCTGAATGGAGGGGCCCTGAAGAGCAGTGCACAGGGAAGCTGTCCGGGAGGTAGGAACGAGTCACTCAACTCACCCACCACCAAGAGGAAGAGGGTCAAATTCACCACCTTCTCCAACGTCAAGCCCAATAATGGATGCCCAGTTCTGAGCCCACTGGCACTCGGACTGACCAACGACATTAAGTGGGTGTGTCCAGACATCGAGCTCGGGGACTCGCAAGAGCTCCGGAATTACATGGAGAGGTTGAACGAGAACGCTACAAAGAACGTTGTATAGAGACGCTTGTATTTTTAGTGGACGAATGAGTAACTCTAACACACCCGAATGCCTTCAGAGTAAGGAGGGAATGAGGGGTGCGTTTATTGAAATTGGTTGGCACTGTACCTCGCTATGACAACAAGATGGAGCGTTCCAGCCATTGTTGTTTCCATTGTTACTATCAGAATGGTCAAGGATCAGAAATGAGGGGAAACTCAAATTGCCATTACACCACATTGGATATGTGGGAATTTTTTTAACTTGAATGACACTTTAATTAGTAAATATATCTGCTCCCTGTCTTTAATTTTAGATAACAAAATGAAATAAGTTTTTCAGGCACAGCTCTCTTTGTTGACTTTTTAAATCATACTTTCCTTATTCTGCTGTGTATTATGTTGTTAAGCAATTACAGTCCATGAGAGAAGTGTTCAAAGCTATTAAAATTGTAAATAAGTTGAGCATAGAGACTGGTTTGGAGTATGAGAGAATATTTTGTAACGTCTTTCTTTAGTCTGTCCTCCTTTTTGCATTTAATTTTGTTCTCCAGAGATCAACATGCATGTTACTAAAGACAAAGCCTGTCTTAGTTCCTGTTGATCCGTCAGAAATaaatgtgtacatactgtagagtcCTCCCTATAAGACACATGCttctctcacacacatccctGTCAAAGACATGACATTCATTGAATAGCTGAGCTCTAGGTTGTGTGTTTTCttattattttgtcatttttttcttatctttccttttctctctattATTAGAAGTCAACAGGAGTGTCTCCTACTTGCTGTTTGTGACattcttttgttattttgttgtcaAGGTAGTTGATATGATTCCTTTGACTGTTTCCAATGTCTAGGTAAAACCTGTAGCCTATATGGAGATTTTTACTCCTTGTGTAATTAGTTTAATTCTGACCTTACCTGTAATTATTGGTGAGCGTAACTGTTGGTGAGCTACATCCTGTTAAATCCACATTTTGTATCTATTTATTCCACTTTCAGATGGACCATAATCACtccagattatttcacttagactGAGTCATCGAACCCAAACACAGAATATAGTACAGGTCTATTACCAGAACCAATGGTTGGTGCAGATCAGTATAGCATACTAGTATAAGGATGCTAGTACATTAAACTAAACTCTAATGACATGAGCTGCTGAGTTCCAGGTGGAATAGTGATCCGCTCTGTGGCAAAAATCCTGACGagtccatccccatccctccttcctccccgtcAATCAGATCCATAGATGTCCATCCCTTACCGTTTTCAAAATGGCCTCTGGATTTGATTAAAACTAAAAGGTgaaacctc

Function

NR:

description
PREDICTED: transmembrane protein 132C-like

GO: NA

KEGG:

id description
K17599 TMEM132; transmembrane protein 132

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977176.1 True 5590 mRNA 0.50 9 27764855 27944738

Neighbor

gene id symbol gene type direction distance location
LOC110522882 sfswap coding downstream 483348 27140510 ~ 27281507 (-)
mmp17a mmp17 coding downstream 700475 26963001 ~ 27064380 (-)
ulk1b NA coding downstream 827795 26901777 ~ 26937060 (-)
LOC110523523 ub2g1 coding downstream 865982 26895242 ~ 26898873 (-)
LOC110523517 LOC106566303 coding downstream 909676 26810766 ~ 26855179 (-)
LOC110523530 LOC100195848 coding upstream 73008 28017746 ~ 28041548 (-)
LOC118964545 NA coding upstream 99228 28043966 ~ 28045743 (-)
LOC110523532 LOC106566453 coding upstream 131042 28075780 ~ 28080536 (-)
LOC110523533 LOC100194645 coding upstream 144933 28089671 ~ 28093393 (-)
LOC110522901 LOC106566140 coding upstream 181115 28125853 ~ 28131303 (-)
G385338 NA non-coding downstream 54739 27709912 ~ 27710116 (-)
G385335 NA non-coding downstream 58433 27705954 ~ 27706422 (-)
G384904 NA non-coding downstream 290454 27474138 ~ 27474401 (-)
G384888 NA non-coding downstream 306259 27458332 ~ 27458596 (-)
G384854 NA non-coding downstream 357801 27406591 ~ 27407054 (-)
G385486 NA non-coding upstream 7783 27952521 ~ 27952746 (-)
G385493 NA non-coding upstream 11497 27956235 ~ 27956446 (-)
G385654 NA non-coding upstream 154586 28099324 ~ 28099558 (-)
G385657 NA non-coding upstream 158502 28103240 ~ 28103603 (-)
G385600 LOC106566461 non-coding upstream 166870 28111608 ~ 28112752 (-)
G383422 NA other downstream 1766075 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 2323061 25437411 ~ 25441794 (-)
G380648 NA other downstream 4003048 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 4052964 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 4208312 23488916 ~ 23556681 (-)
G385617 NA other upstream 64529 28009267 ~ 28010077 (-)
G385769 NA other upstream 269805 28214543 ~ 28214819 (-)
G386126 NA other upstream 407037 28351775 ~ 28354745 (-)
G386222 NA other upstream 546228 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 1058945 28994099 ~ 29004755 (-)

Expression


Co-expression Network