LOC110522901 (LOC106566140)


Basic Information

Item Value
gene id LOC110522901
gene name LOC106566140
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28125853 ~ 28131303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977180.1
AGCGCCATCCACCACGCACCTGCAAACACATACTCgccccactcctccacctccgACACCTTCCCTTCCATCTGCACACGCAACCCCTGGTCTGGCCGGATGAGTTACCACCCGGTGGACACGATAGGGAGTCCATTCAGGAGAAGTATGGATAGTAGGACCACCTACGGCCGCTCCACTGGCACACCCTCCAGCGGGTTCCGTTCTCAGTCCTGGTCCCGGGCAAGCCCAGGCTCCACGATGACCTCCTCCTACAAGAGGAGCGTCAATGTGCCGGTAGCCAGAGCGTACAGCTCCACACTCCTCAGCTCCGCCGACAGCGTTGATTTCAATCAAACGAACGGAGACTACAAGCGCTCCAACGAGAAAGAGCAGCTCCAGGGGCTCAACGACCGATTCGCCGGTTACATCGACAAGGTGCACTACCTGGAGCAGCAGAACAGCCAGATCGAAGAGGAGATCCAGACGCTGCGGCAGAAGCAGGTGTCACAATCCCAGCTAGGCGATTTATACGACCAGGAACTCCAGGAGCTGCGCTCCATGCTGGAGCAGATTCACCACGATAAAGCGCAGATCCAGCTCGACACGGACCACGTCGAGGATGACATCCAGAGAATTAGGGACCGCTTCGATGAGGAAGCCCGCATCAGGGATGAGACGGAAGGCATCATCCGGGCGTTGAAAAAAGATATGACCGACTCTGATTTGGTGAAGTCAGAGTTGGAGAAGAAAGTTCAGTCACTGCATGACGAGATTGCCTTTATCCGCAACAACCACGCAGAAGAGGTGAGCGACCTGTTCGCCCAGGTGCAGGCGTCGCAGGTGACCATGGAGAGGAAAGACATCCAGAAGACGGACATCACCGAGGCGCTCCGGGAGATCCGCACCCAGCTCGAGGGCCACTCCAACCAGAACCTGCAGCAGGTGGAGGACTGGTTCATGTGCCGCTATTCCAAGCTCACTGATGCTGCGGCACAAAACAAAGATGCAATCAAGTCCGCCCGTGATGAGATAGCAGACTACCGTCGCCAGCTTCAGTCCAAGACCGTGGAGTTAGAGTCCGTCCGTGGAACCAGGGAGTCACTGGAGAGGCAATTGAATGACATCGAGGACCGACACAACAACGACCTGTCCAGCCTGCAGgagaccatccaccagcTGGATAATGAGCTCAAGGGCACGAAGTGGGAGATGGCGCGTCATCTGCGTGAGTACCAGGACCTGCTCAATGTCAAGATGGCCCTCGACATTGAGATTGCTGCATACAGGAAACTCCTAGAAGGTGAAGAGACCCACTTTAGCACTTTCCCCTACCGCCACACCGTCACCTCCTCTAAGAAGTCCAAGTATGAGCCTCCCAAACTGAAAGTCCAGCATAAGTTTGTAGAGGAGATCATCGAGGAGACCAGGGTAGAGGATGAGAAGGATGAGATGGACCAGGCCCTGGCTGAGATGGCCCAGGAGTTTTCTGCCACTCTGGAGGCAGAGGCAacagatgaaggagaggatgagggagaagagggaggagaagaagcagagggagaagggggagagggtgaaTCAGAAGAGGTTGTAGCCTCCACTGAAGCCCAAGTTAGCTCCAGCACACctgctgaggaggaagaggaggacaaagAAGGTggtgatgaagaggaagagggagaaaaagaagaagagggtgagaaaggagaagagggtgagGGTGAGAAGGGAGATGATACAGAAGGTGGtgatgagggagaaggagagggggaattagAGGAGACAGTCCTGTGCTCCAAAGCCCCAGAATCAAAGGCCTCTCCTGACAAAGAGAAggctggagagaaggagggacgcggaggagaagaggagacaggagagggagagggagaagaggagggtgatGATCAAGATGAAGATGCAGGTAGTGACAAAGGATCCAAAGATGGAGATGATAAGGATGAGGAAGATGAGAAGAAAGGAAAGGATGAGAAAGAAGACAAAACAGATGAGAAGGCAGCTGTAGCCAAGACAGAGGCTCCCAAAACAGAAGCCCCCATGAGTGAGGCCCCAAAAGTTGAGGTCCAGAAATCTGAGTCCCCAAAGCCCTCCAAGCCAGACTCCCTAAAAGCTGAATCCCCAAAGGCTGGGTCGCCTAAGTCTGAGTCACCAAAAGCTGGATCCCCCAAACATGAATCTCCCAAAGCTGTAACCCCCAAATCTGAATCTCCAAAACCTAGCTCCCCCAAATCTGAATCCCCGAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCACCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGATGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTAGCTGGATCCCCTAAATCTGAATCCCCAAAGCATGCTGGATCTCCTACTTCTGAATCCCCAAAACCTGCAGGATCCCCTAAATCTGATGGCTCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTTGCTGGATCCCCTAAATCTGAATCCCCAAGACCTGCTGCATCCCCTACTTCTGAATCCCCCAAACCTGCTGGCTCCCCAAAATCGGAATCCCCAAAACATACAGTATCCCCCAAATCTGAATCCCCCAATTTAGGATCCCCTGAGGCAGAGTCCCCTAAGGGTGAGGCCCCCAAACCAGAAGCTCCAATGTCAGAGGCCCCCACGGCTGCAGAAGAGAAAGTAGACAAAAATAGTGattcagaggaagagaggaaggtagaAAAGAAAGACGCAGCCATGAACGGAGATGTGGAGAAGATTACCCCAGAGGACAAGGACAAGAAGGATGAGGGTGGGAAAGAGGCAGAGGAGAAGGATGTTATCTCAAATGGAGTGGACGAGAGCCCCACTAAAGATGACCCGGACCAGAAAGATGATCCAAAGGACCAGAAGGTGGTCATCACCAAAACGGTGGAGACCATTACCACTGGAGAGGATGGAGCCAAGCATGTCACCAAATCTGTCACTGTCACCGAGACTGTGAAGGAGTCTGAGGATGTGATGCAGGAGAAGACAGTCTCCAGCAAGAAGATGGAGAAACACTCTTCCCAGTCCGTCAAGGTGGTGACTGAAACTGAGTAACTGCGCTCCATCCAACCCACTCAGGAGGAACAAAGATGACACGACAACAAGCAATCAACCCAGAACTAACATAACAAAGAAATCATAGTGCTAGAGCGATGTAATAAAGAGAACCACTCTCAAACATCCAGAAAAGCAACGAGAGAAGCCATATGATGTGACAAAGCTAACGTTTAAAAAATGCATGTTGAGAGAAAGCTTTAAATGGGTTTTGCTGCAGATTATATCAGGAAAATGTGATAGTGGGACAGATTATTAATTGTCTTTATGTTTCCCTGCAGTTCACGGGAGGGCTCACGGGTGGGGGCGTCTGCATGCTAGCTCAGGGAGGGAGACCCCTCCGCTCTAACCTGTATGTATGGATGGAAGGTTTACagtttagatactgtatgtggGTGGGAGAGTGATAGAAATGTATGTTCATTCAAATGTTAATTCAAAAAGGGGTGCCTGGGTTGGACGGTCCACTTTAGAGACACATGTTCAAAAGGACTAGCCTTTTTATGTGAAGATACCAACTGAGCCAAAAATACAATCGTCTACAACACAATATAGTGAAGAATGAGAAAGACAATGGTGCAATGTACTGATGATCATAAACATACAGTACCCGAAGCAACTAAAGCATTAAGAACCTTGAAGAAACTCTGAGCCTTAAACATGCTTTTTATCAGTATCTATTGTGTTTACCTAATGAGTGCAATTGAAAATAAATATGTAAATGCGCACACATACATTCTTGTATGCATAGGATGGACTTGAATTTAAATAGCGAACTTAAATGAGGTGCTACAGTTTGCAATCCCATGTCTTTACTCATCATGAACTATTTCCCAGCAGCATTTGCTCAATAAATGTCATACTGAAATACAAA
>TU438130
ATAGAAATGTATGTTCATTCAAATGTTAATTCAAAAAGGGGTGCCTGGGTTGGACGGTCCACTTTAGAGACACATGTTCAAAAGGACTAGCCTTTTTATGTGAAGATACCAACTGAGCCAAAAATACAATCGTCTACAACACAATATAGTGAAGAATGAGAAAGACAATGGTGCAATGTACTGATGATCATAAACATACAGTACCCGAAGCAACTAAAGCATTAAGAACCTTGAAGAAACTCTGAGCCTTAAACATGCTTTTTATCAGTATCTATTGTGTTTACCTAATGAGTGCAATTGAAAATAAATATGTAAATGCGCACACATACATTCTTGTATGCATAGGATGGACTTGAATTTAAATAGCGAACTTAAATGAGGTGCTACAGTTTGCAATCCCATGTCTTTACTCATCATGAACTATTTCCCAGCAGC

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977180.1 False 4324 mRNA 0.50 3 28125853 28131303
TU438130 True 435 lncRNA 0.36 1 28125886 28126320

Neighbor

gene id symbol gene type direction distance location
LOC110523533 LOC100194645 coding downstream 32460 28089671 ~ 28093393 (-)
LOC110523532 LOC106566453 coding downstream 45317 28075780 ~ 28080536 (-)
LOC118964545 NA coding downstream 80110 28043966 ~ 28045743 (-)
LOC110523530 LOC100195848 coding downstream 84305 28017746 ~ 28041548 (-)
LOC110522892 LOC106563163 coding downstream 181115 27764855 ~ 27944738 (-)
LOC110523536 LOC106566140 coding upstream 10206 28141409 ~ 28197809 (-)
ndr1 ndr1 coding upstream 229176 28360479 ~ 28362903 (-)
LOC110523544 LOC106567207 coding upstream 273202 28404505 ~ 28406150 (-)
c7b c7-1 coding upstream 299743 28431046 ~ 28435357 (-)
gadd45gb.1 LOC106566617 coding upstream 345427 28476730 ~ 28478364 (-)
G385600 LOC106566461 non-coding downstream 13101 28111608 ~ 28112752 (-)
G385657 NA non-coding downstream 22250 28103240 ~ 28103603 (-)
G385654 NA non-coding downstream 26295 28099324 ~ 28099558 (-)
G385493 NA non-coding downstream 169407 27956235 ~ 27956446 (-)
G385486 NA non-coding downstream 173107 27952521 ~ 27952746 (-)
G385743 NA non-coding upstream 4781 28136084 ~ 28136313 (-)
G385758 NA non-coding upstream 67661 28198964 ~ 28199355 (-)
G385767 NA non-coding upstream 82084 28213387 ~ 28213618 (-)
G385790 NA non-coding upstream 121744 28253047 ~ 28253619 (-)
G385617 NA other downstream 115776 28009267 ~ 28010077 (-)
G383422 NA other downstream 2127073 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 2684059 25437411 ~ 25441794 (-)
G380648 NA other downstream 4364046 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 4413962 23709798 ~ 23711891 (-)
G385769 NA other upstream 83240 28214543 ~ 28214819 (-)
G386126 NA other upstream 220472 28351775 ~ 28354745 (-)
G386222 NA other upstream 359663 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 872380 28994099 ~ 29004755 (-)
G386725 NA other upstream 877935 29009238 ~ 29045158 (-)

Expression


Co-expression Network