RNA id: XM_036977180.1


Basic Information

Item Value
RNA id XM_036977180.1
length 4324
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110522901
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28125853 ~ 28131303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGCCATCCACCACGCACCTGCAAACACATACTCgccccactcctccacctccgACACCTTCCCTTCCATCTGCACACGCAACCCCTGGTCTGGCCGGATGAGTTACCACCCGGTGGACACGATAGGGAGTCCATTCAGGAGAAGTATGGATAGTAGGACCACCTACGGCCGCTCCACTGGCACACCCTCCAGCGGGTTCCGTTCTCAGTCCTGGTCCCGGGCAAGCCCAGGCTCCACGATGACCTCCTCCTACAAGAGGAGCGTCAATGTGCCGGTAGCCAGAGCGTACAGCTCCACACTCCTCAGCTCCGCCGACAGCGTTGATTTCAATCAAACGAACGGAGACTACAAGCGCTCCAACGAGAAAGAGCAGCTCCAGGGGCTCAACGACCGATTCGCCGGTTACATCGACAAGGTGCACTACCTGGAGCAGCAGAACAGCCAGATCGAAGAGGAGATCCAGACGCTGCGGCAGAAGCAGGTGTCACAATCCCAGCTAGGCGATTTATACGACCAGGAACTCCAGGAGCTGCGCTCCATGCTGGAGCAGATTCACCACGATAAAGCGCAGATCCAGCTCGACACGGACCACGTCGAGGATGACATCCAGAGAATTAGGGACCGCTTCGATGAGGAAGCCCGCATCAGGGATGAGACGGAAGGCATCATCCGGGCGTTGAAAAAAGATATGACCGACTCTGATTTGGTGAAGTCAGAGTTGGAGAAGAAAGTTCAGTCACTGCATGACGAGATTGCCTTTATCCGCAACAACCACGCAGAAGAGGTGAGCGACCTGTTCGCCCAGGTGCAGGCGTCGCAGGTGACCATGGAGAGGAAAGACATCCAGAAGACGGACATCACCGAGGCGCTCCGGGAGATCCGCACCCAGCTCGAGGGCCACTCCAACCAGAACCTGCAGCAGGTGGAGGACTGGTTCATGTGCCGCTATTCCAAGCTCACTGATGCTGCGGCACAAAACAAAGATGCAATCAAGTCCGCCCGTGATGAGATAGCAGACTACCGTCGCCAGCTTCAGTCCAAGACCGTGGAGTTAGAGTCCGTCCGTGGAACCAGGGAGTCACTGGAGAGGCAATTGAATGACATCGAGGACCGACACAACAACGACCTGTCCAGCCTGCAGgagaccatccaccagcTGGATAATGAGCTCAAGGGCACGAAGTGGGAGATGGCGCGTCATCTGCGTGAGTACCAGGACCTGCTCAATGTCAAGATGGCCCTCGACATTGAGATTGCTGCATACAGGAAACTCCTAGAAGGTGAAGAGACCCACTTTAGCACTTTCCCCTACCGCCACACCGTCACCTCCTCTAAGAAGTCCAAGTATGAGCCTCCCAAACTGAAAGTCCAGCATAAGTTTGTAGAGGAGATCATCGAGGAGACCAGGGTAGAGGATGAGAAGGATGAGATGGACCAGGCCCTGGCTGAGATGGCCCAGGAGTTTTCTGCCACTCTGGAGGCAGAGGCAacagatgaaggagaggatgagggagaagagggaggagaagaagcagagggagaagggggagagggtgaaTCAGAAGAGGTTGTAGCCTCCACTGAAGCCCAAGTTAGCTCCAGCACACctgctgaggaggaagaggaggacaaagAAGGTggtgatgaagaggaagagggagaaaaagaagaagagggtgagaaaggagaagagggtgagGGTGAGAAGGGAGATGATACAGAAGGTGGtgatgagggagaaggagagggggaattagAGGAGACAGTCCTGTGCTCCAAAGCCCCAGAATCAAAGGCCTCTCCTGACAAAGAGAAggctggagagaaggagggacgcggaggagaagaggagacaggagagggagagggagaagaggagggtgatGATCAAGATGAAGATGCAGGTAGTGACAAAGGATCCAAAGATGGAGATGATAAGGATGAGGAAGATGAGAAGAAAGGAAAGGATGAGAAAGAAGACAAAACAGATGAGAAGGCAGCTGTAGCCAAGACAGAGGCTCCCAAAACAGAAGCCCCCATGAGTGAGGCCCCAAAAGTTGAGGTCCAGAAATCTGAGTCCCCAAAGCCCTCCAAGCCAGACTCCCTAAAAGCTGAATCCCCAAAGGCTGGGTCGCCTAAGTCTGAGTCACCAAAAGCTGGATCCCCCAAACATGAATCTCCCAAAGCTGTAACCCCCAAATCTGAATCTCCAAAACCTAGCTCCCCCAAATCTGAATCCCCGAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCACCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGATGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTAGCTGGATCCCCTAAATCTGAATCCCCAAAGCATGCTGGATCTCCTACTTCTGAATCCCCAAAACCTGCAGGATCCCCTAAATCTGATGGCTCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTTGCTGGATCCCCTAAATCTGAATCCCCAAGACCTGCTGCATCCCCTACTTCTGAATCCCCCAAACCTGCTGGCTCCCCAAAATCGGAATCCCCAAAACATACAGTATCCCCCAAATCTGAATCCCCCAATTTAGGATCCCCTGAGGCAGAGTCCCCTAAGGGTGAGGCCCCCAAACCAGAAGCTCCAATGTCAGAGGCCCCCACGGCTGCAGAAGAGAAAGTAGACAAAAATAGTGattcagaggaagagaggaaggtagaAAAGAAAGACGCAGCCATGAACGGAGATGTGGAGAAGATTACCCCAGAGGACAAGGACAAGAAGGATGAGGGTGGGAAAGAGGCAGAGGAGAAGGATGTTATCTCAAATGGAGTGGACGAGAGCCCCACTAAAGATGACCCGGACCAGAAAGATGATCCAAAGGACCAGAAGGTGGTCATCACCAAAACGGTGGAGACCATTACCACTGGAGAGGATGGAGCCAAGCATGTCACCAAATCTGTCACTGTCACCGAGACTGTGAAGGAGTCTGAGGATGTGATGCAGGAGAAGACAGTCTCCAGCAAGAAGATGGAGAAACACTCTTCCCAGTCCGTCAAGGTGGTGACTGAAACTGAGTAACTGCGCTCCATCCAACCCACTCAGGAGGAACAAAGATGACACGACAACAAGCAATCAACCCAGAACTAACATAACAAAGAAATCATAGTGCTAGAGCGATGTAATAAAGAGAACCACTCTCAAACATCCAGAAAAGCAACGAGAGAAGCCATATGATGTGACAAAGCTAACGTTTAAAAAATGCATGTTGAGAGAAAGCTTTAAATGGGTTTTGCTGCAGATTATATCAGGAAAATGTGATAGTGGGACAGATTATTAATTGTCTTTATGTTTCCCTGCAGTTCACGGGAGGGCTCACGGGTGGGGGCGTCTGCATGCTAGCTCAGGGAGGGAGACCCCTCCGCTCTAACCTGTATGTATGGATGGAAGGTTTACagtttagatactgtatgtggGTGGGAGAGTGATAGAAATGTATGTTCATTCAAATGTTAATTCAAAAAGGGGTGCCTGGGTTGGACGGTCCACTTTAGAGACACATGTTCAAAAGGACTAGCCTTTTTATGTGAAGATACCAACTGAGCCAAAAATACAATCGTCTACAACACAATATAGTGAAGAATGAGAAAGACAATGGTGCAATGTACTGATGATCATAAACATACAGTACCCGAAGCAACTAAAGCATTAAGAACCTTGAAGAAACTCTGAGCCTTAAACATGCTTTTTATCAGTATCTATTGTGTTTACCTAATGAGTGCAATTGAAAATAAATATGTAAATGCGCACACATACATTCTTGTATGCATAGGATGGACTTGAATTTAAATAGCGAACTTAAATGAGGTGCTACAGTTTGCAATCCCATGTCTTTACTCATCATGAACTATTTCCCAGCAGCATTTGCTCAATAAATGTCATACTGAAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437971 lncRNA downstream 13101 28111608 ~ 28112752 (-) True G385600
TU438042 lncRNA downstream 22250 28103240 ~ 28103603 (-) True G385657
TU438039 lncRNA downstream 26295 28099324 ~ 28099558 (-) True G385654
TU437854 lncRNA downstream 169407 27956235 ~ 27956446 (-) True G385493
TU437847 lncRNA downstream 173107 27952521 ~ 27952746 (-) True G385486
TU438150 lncRNA upstream 4781 28136084 ~ 28136313 (-) True G385743
TU438136 lncRNA upstream 10106 28141409 ~ 28157161 (-) False LOC110523536
TU438131 lncRNA upstream 10206 28141509 ~ 28157161 (-) True LOC110523536
TU438165 lncRNA upstream 67661 28198964 ~ 28199355 (-) True G385758
TU438174 lncRNA upstream 82084 28213387 ~ 28213618 (-) True G385767
XM_021602314.2 mRNA downstream 32460 28089671 ~ 28093393 (-) True LOC110523533
XM_036977179.1 mRNA downstream 45317 28075780 ~ 28080536 (-) True LOC110523532
LOC118964545 mRNA downstream 80110 28043966 ~ 28045743 (-) True LOC118964545
XM_021602306.2 mRNA downstream 84305 28017746 ~ 28041548 (-) True LOC110523530
XM_021602303.2 mRNA downstream 84306 28017746 ~ 28041547 (-) False LOC110523530
XM_036977188.1 mRNA upstream 10206 28141509 ~ 28146959 (-) False LOC110523536
XM_036977193.1 mRNA upstream 10206 28141509 ~ 28161995 (-) False LOC110523536
XM_036977182.1 mRNA upstream 10206 28141509 ~ 28197809 (-) False LOC110523536
XM_036977192.1 mRNA upstream 25365 28156668 ~ 28161994 (-) False LOC110523536
XM_036977194.1 mRNA upstream 25365 28156668 ~ 28161994 (-) False LOC110523536
TU437993 other downstream 115776 28009267 ~ 28010077 (-) True G385617
TU435637 other downstream 2127073 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 2684059 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 4364046 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 4413962 23709798 ~ 23711891 (-) True G380610
TU438176 other upstream 83240 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 220472 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 359663 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 872380 29003683 ~ 29004755 (-) True anapc2
TU439206 other upstream 877935 29009238 ~ 29045158 (-) False G386725

Expression Profile