RNA id: TU439206


Basic Information

Item Value
RNA id TU439206
length 4149
RNA type TUCP
GC content 0.43
exon number 4
gene id G386725
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29009238 ~ 29045158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAATTCTCGCGATTGTACACTATCTCAGTGAAGGAAGGAAAATATTACGAAAAAATCGGAACTCAATGAATTAAGCTGAAGATATCGTTCAACGAGTCGAGCATGCAGAGCAGCTATGAGTACCCCTCAGAGAGCAGCGTGTGGgacagcgaggaggaggaggaggaggaggatgaggaggaggaggaggcggcggcggcggaagggaagggaggaggtcaGGAGGAAGATCAGCCCAGCATGGTGGGCCGCATCCACATCCCTCGTCCGAGCTACACCAGCAACGGcactgATCTGTCCAGTTACATTCCCAAGCACACTGTGGATTTTAACAGCTGGCAGGAACATAAGCTTGATGACCCTGTTTACCAGGGGGACACCAATTTCCAGCGCACACAGATGTCAGGGGAAGTTATGctcACCCCAGCAGACAGCTCCTTGCTGTCAGATTTCAGCAGTGAACCTGCTCTGTACTTCTGATATGCCTGGACCAAACAGGAATGACCACTGCCCTACAGCTTGGACTCAGAACCACAGTTACACAACCCAGGCTGGGACCAGACTCCTACCAGTGCCCAGTGAGACCAGTGCCCAGTGAGACTTAACAGAATTGGACCTCAAGTCGCACTCCAACACAATCAAAGCACTCTTTTTTTCACACCTTGTTTAATTTGATACATAGACATCAACCAACCACAACCCAAGCAGCTGGACTGTCCTCACCTTACATGTACAGTtgatctgtctgttctctcaacCACTACCAATTCCTCTCACTGACTGCCATTGAGCGGTGAAGTCTGAACCAGATCTCTGACAGACTGTATTTGATTGTCCAAAGAAATCTGAGCTTGAAAGATAATCATGCATTATAATGCTGTTTTCCAGGCTTTACGATCTCTAGAAGGCGGCTATCTGGCTCCATTCTGTCTGCCttgatgtctctctgtctccatcattgttgtcatattatatatactgtGTATGTATAACAGGAATGACCAcaatacaatgcattcagaaagtattcagaccccttgactttttcacattttaatgttacagccttattctaaaattgattcaattgttttttccccctcattaatctacacacaataccctataatgacaatcaaaaacaggttttttatAAATGATATTTGcgtactttgtttaagcacctttggcatcaaTTACAGCCTTGCGTCTTCCTGGGTATAACGATACAAGCTTCGCAcccctgtatttggagagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagtatcactgcacagctatttttcggtctctccagagatgtttgattgggttcaagttcgggctctggctgagccactcaaggacattcagagacttgtcctgaagccattcctgcattgtcttggctgtgtgcttcgggttgttgtcctgttgtaaggtgaatctttgccccattctaaggtcctgagcattttggagcaggttttcatcaaggatctctctgtactttgctctgttcatctttccctcgatcctgactagtctccaagtttctgccgctgaaaaacatccccacaggatgatgctgccaccatgcttcaccatagggatggtgccaggtttcctccagactggcactccaggcaattggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatgttcagagtcctttaggtgccttttgggtaactccaagcgggctgcattgtgcctttttactgaggagtggtttccgtctggccactctcccataaaggcctgattggtggagtgctgcagagatggttgtccttctggaagattcttccATCTcaatagaggaactctggagctctgtcagtgaccatcagttTGGCCgtacggccagctctaggaagaatcttggtggttccatacttcctcagtttaagaatgatggaggccactgttcttggggacctccaatgctgcagaaaagtacccttccccagatctgtgcctcaacacaatcctgtctcggagcactaTGGATAGTTCCTTCGActttatggcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtacctttccaaatcgtgttcaatcaattacatttaccacaggtggaatcaaatcaagttgaagaaacatctacatttccagtctcatagaaaaaggtctgaatacttatgtaaataaggtatttcagtttctatttttttttataaatgtgcaaactattttaaaaacctgttttcactttgtcattatggggtattgtgtgtagattgatgaggatatgttttgtttatccattttagaataaggctgtaacaaaatgtgaaaaaaagtcaaggggtctgaatactttccaaatgcagtgTATGGTGTCTGTGTGTCCTTGTAAAGGGGATTTGTGTAGTGGTGGTGACCAAATTCCTTAAACAAGGAAGCCATCAGTGCCCATTCTTATCAAGAAGAGACTGTTGTGTCCTGGAGTCCCAAAACGTAGGCTGAGGACGCCACACTTCATAGGGAACGGGCagacaaacacaaacaatacttaaaTACGGCAAGGGTTCCACAATCCTAGTCGTTTTTCTACCTGATTTCACTTGACTTGGTTCCCCTTAGTGTATGCTTCTTCTGTGTGCCTTTCAGTTGTTGTATGTTTCCAATGCTGTGTTGGAGATTTTGCCAGAAGAGTGCAGGAGCAAGCGAATGTCAACACTCCCTCTTATAATTAAGAAATGCTCTGTAGACCTGCTCAACTTTGTTTGATCATCAAAGAGCTGTGAAGTGATATTATACCTTCTGCAAGAAGCTTAATGTCAAAGGGACAGTAAATTAGACCCATTGTCTAGAATACTATTATAAACTATTTCCCCCATTCAGTGTTAATGTTTGAACACTGCCAAGTGTGAAAGATACCAAGAATAGCAACTATTGAAACAATTCACCAGCATGTGCGTTTGAAAGGTCGCCTTTCAGATACTCGTTCTTGTGTAGTGTATGGAACAAGGAAGGGTGTGTCCTCATGGCCATGTTTTTCCTTCATTGACCAGTGAATAGCTTCTGACCTCAACCAGACCTCCTTCACATTCCatagagcagggtttcccaaacttggtccacAGAACCCCAAGAGGTGCACGTTTTTGTTTTAACACTACACACTTGAATGATGAATAgttgatttgaatcagctgtgtaatgctagggcaaaaacctaaACATGCAGTCGTTTGGGAGCCCCTGCCACAGTGAGCTGGTCTATTTTAGTAATGAAGACATTGATCTTACACACAATTGTTTAtcggagatttaaaaaaaaaaaatatggctTTAAGTCTTCAAGATTTTTACTCAATGCCAATTGACTTGTTAATTACTGTGGACGACAACTCGCATTCTCAAACATATTCCTTCGGACAGTATTGATGTACAGTTTATATACTCCACAATGTATTGCTTTTTGAATATCTTCAAAGGAAGAGGTTTAGATTGGACAGGACTGGCAACATTTCTATACTGTAACTTTCATGATTAGACACTTgtcaatattttattttaaacctCATACAGGCAAGGTGAAAGTGTTCATCAATCgatgtactgtatgtcaatgAGAAACAAGGAATGCATGCTGTTTCTGCCACAACCCTATTGGGGAAACCAGGGAATGATAACTGGTTAGTGTCCACTGATGAGCACACCTGCCATTCATCTGTGCCAACTGCTGCATTTAGGACCAAATCCCTAAGTAGGCCAGCAGCTTTTCCTGGGAATTGTGCCTTTAATTGAATCAGGGGACCAAGAGCCAGGGCTTTATAATGGCATGTTTCAGTGACACCAGCAAGATTGGGATGAGACGGATTCACTTGAAAGAATATTGATGACGCCTGGGACCATTGTATATTCCTGTTAAGAAAGATGAGGCTTCCAGCTACACTATTAATCTCCAGCATCAAAGATGTGCTTACTGTAAAATTTGTAGTTGTCAATGATTTGGGCAAAAAGATGTCAACTGTACAAATGAAAGCTCAATAAATAGATGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439213 lncRNA downstream 156 29006577 ~ 29009082 (-) True G386729
TU438852 lncRNA downstream 231102 28773618 ~ 28778136 (-) True G386403
TU438835 lncRNA downstream 238669 28756371 ~ 28770569 (-) True G386389
TU438819 lncRNA downstream 275395 28733594 ~ 28733843 (-) True G386374
TU438778 lncRNA downstream 339239 28669621 ~ 28669999 (-) True G386338
TU439240 lncRNA upstream 25415 29070573 ~ 29149445 (-) False traf2b
TU439243 lncRNA upstream 45595 29090753 ~ 29092857 (-) True traf2b
TU439266 lncRNA upstream 89562 29134720 ~ 29135479 (-) True G386777
TU439287 lncRNA upstream 124518 29169676 ~ 29169913 (-) True G386797
TU439354 lncRNA upstream 130079 29175237 ~ 29175563 (-) True G386855
XM_021602363.2 mRNA downstream 4602 28994099 ~ 29004636 (-) False anapc2
XM_021602361.2 mRNA downstream 15622 28935569 ~ 28993616 (-) False LOC110523562
XM_021602362.2 mRNA downstream 15622 28935571 ~ 28993616 (-) True LOC110523562
XM_021602359.2 mRNA downstream 93194 28915423 ~ 28916044 (-) True LOC110523560
XM_036977211.1 mRNA downstream 217188 28780462 ~ 28792050 (-) False apba1b
XR_002473465.2 mRNA upstream 10785 29055943 ~ 29059785 (-) True LOC110523568
XM_021602372.2 mRNA upstream 25415 29070573 ~ 29092800 (-) False traf2b
XM_021602370.2 mRNA upstream 28741 29073899 ~ 29092847 (-) False traf2b
XM_036977217.1 mRNA upstream 58405 29103563 ~ 29116365 (-) True bspry
XM_021602382.2 mRNA upstream 126261 29171419 ~ 29174255 (-) True LOC110523575
TU439211 other downstream 4483 29003683 ~ 29004755 (-) True anapc2
TU438654 other downstream 517866 28490966 ~ 28491372 (-) False G386222
TU438555 other downstream 654493 28351775 ~ 28354745 (-) True G386126
TU438176 other downstream 794419 28214543 ~ 28214819 (-) True G385769
TU437993 other downstream 999161 28009267 ~ 28010077 (-) True G385617
TU439581 other upstream 347937 29393095 ~ 29394816 (-) True G387064
TU439568 other upstream 389447 29434605 ~ 29435311 (-) True G387052
TU439860 other upstream 558025 29603183 ~ 29644748 (-) True G387321
TU440431 other upstream 776255 29821413 ~ 29824570 (-) False LOC110523591
TU440412 other upstream 776309 29821467 ~ 29824570 (-) False LOC110523591

Expression Profile