LOC110523560 (mch1)


Basic Information

Item Value
gene id LOC110523560
gene name mch1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28915423 ~ 28916044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602359.2
GAACGAGCTCGAAAAAAATCACAACAACCTGCAACATCAACCTCAACGAAGATCCTCCTTCTCCAAGATGAGACActctgtcctctccatctcttttgcCGTGGCACTTTTCTTGGAGTGCTACACACCGTCCACGGCGATCCCCATCGGCAAGATGGACGACGTCGCCTTGGAGCAAGATACCCTCGACTCCCTACTGCGTGTAGAGGTGTCTGAAAACAGCCCTGATTCAGTCAGAGGCAGGAGCTCCAAGATTGTCTTGCTGGCAGACTCTGGCCTGTGGATGAACCTGAACAGAGGACTTCCTTTCTACAAGCTGAGAGCTGCAGCCGCCGGGCCTGACAGAGCCCTGACTCTGGACCGCCAAGAGGCTGGCCAGGACCTAAGCCCCAGTATCTCCATCGTCAGGAGGGACACCATGAGGTGTATGGTGGGAAGGGTGTACCGACCCTGCTGGGAGGTGTAGAGTTGACCAATGAGAGCGTCTCGTCTCATCATCAATCTGCCAGCCAGATTACCCTTCTGCATCTTAAGTTGTATAATATGATCTTTCGCTTTTGAGTATATGTATTCATGTAATTACATGAACTGATATCTGCAATTAAAAAGACAGGACACTGCA

Function

symbol description
mch1 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Located in fungal-type vacuole membrane.

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0030354 melanin-concentrating hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602359.2 True 622 mRNA 0.51 1 28915423 28916044

Neighbor

gene id symbol gene type direction distance location
apba1b LOC106566682 coding downstream 123373 28780462 ~ 28792050 (-)
zo6 zo6 coding downstream 237745 28672979 ~ 28677678 (-)
LOC110523552 habp4 coding downstream 249699 28659697 ~ 28665724 (-)
LOC110523550 LOC106566624 coding downstream 320455 28536287 ~ 28594968 (-)
gadd45gb.1 LOC106566617 coding downstream 437059 28476730 ~ 28478364 (-)
LOC110523562 LOC106566722 coding upstream 19525 28935569 ~ 28993616 (-)
anapc2 LOC106566731 coding upstream 78055 28994099 ~ 29004755 (-)
tprn LOC106566736 coding upstream 95975 29012019 ~ 29041380 (-)
LOC110523567 LOC106566747 coding upstream 126281 29042325 ~ 29045213 (-)
LOC110523568 NA coding upstream 139899 29055943 ~ 29059785 (-)
G386403 NA non-coding downstream 137287 28773618 ~ 28778136 (-)
G386389 NA non-coding downstream 144854 28756371 ~ 28770569 (-)
G386374 NA non-coding downstream 181580 28733594 ~ 28733843 (-)
G386338 NA non-coding downstream 245424 28669621 ~ 28669999 (-)
G386335 NA non-coding downstream 246648 28667315 ~ 28668775 (-)
G386729 ssna1 non-coding upstream 90533 29006577 ~ 29009082 (-)
G386725 NA non-coding upstream 93194 29009238 ~ 29045158 (-)
traf2b traf2 non-coding upstream 154529 29070573 ~ 29149445 (-)
G386777 NA non-coding upstream 218676 29134720 ~ 29135479 (-)
G386797 NA non-coding upstream 253632 29169676 ~ 29169913 (-)
G386222 NA other downstream 424051 28490966 ~ 28491372 (-)
G386126 NA other downstream 560678 28351775 ~ 28354745 (-)
G385769 NA other downstream 700604 28214543 ~ 28214819 (-)
G385617 NA other downstream 905346 28009267 ~ 28010077 (-)
G383422 NA other downstream 2916643 25996806 ~ 25998780 (-)
G387064 NA other upstream 477051 29393095 ~ 29394816 (-)
G387052 LOC106566935 other upstream 518561 29434605 ~ 29435311 (-)
G387321 LOC100136012 other upstream 687139 29603183 ~ 29644748 (-)

Expression


Co-expression Network