traf2b (traf2)


Basic Information

Item Value
gene id traf2b
gene name traf2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29070573 ~ 29149445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602372.2
aatggactggaaatGTGTCACTCATAATGGAACTATTGTGTGTGCGCCTTCTATGTGCTACAGTCAATTATGGTTGCATTTCATATCTTGGCTAGAAGACAACGCATCAGCAAATATCGAATGTTAGCCATCCTACTATATCAGCTTTGCAAGTTACATTACAAATGTTCCAGTAACATCACATTGAAGCACGTATTGGAAGCTGTATCAGAAGTTGATGGAGGAGCATGGCCCTGCCCTCTTTAGATTCCTCCCTCCAAGGGATCCCGAAGAATGTGCTGGCTGTTTCCATGGAAACTAAGTACCAATGCCAGCAGTGTCACCAGGTCCTGAGGAAGCCGGTCCAGGCTCAGTGTGGACATCGCTTCTGTGTCCACTGTTTCAAACTGCTCACCAGCTCTGGACCCAAGCCCTGTGAAGCCTGTCAACAGGAGGAGATATACGAGGAGCCCCAGTCCATTCTCAATAGCAATGAGgcTTTTCCAGACAATGCAGCCGGTAGAGAAATCGCCAGCCTGCCTGCCAAATGTTTCAATGGGGGCTGCTCTTGGACAGGTTGCATCAAAGAATATGAGGCACAACACGAGGGCAAGTGTGAGCATGAGCACGTACCATGTGAAGCCTGCCAGGTCCTCATCCTGCGTAGTGAAAAAGAGAGGCATAACGAGAGAGAATGTGAAGAAAGAACATTGAACTGCAAGTACTGCAAAGTCTCCTTCAACTTCAAGCAGATCAAGGCTCATGATGAAATCTGCCAGAAGTTTCCCATGCAGTGCAAGGACTGTGGAAAGAAAAAGATCCCACGGGAAAAGTTTCTAGATCACAGCAGATCCTGTGCCAAGTCTAAGACTGCATGTCCATTCAGTGAGGTTGGCTGCAAGGCTGTGATTGATAATGGAAAACACAGTGACCACGAGCAGACGAACGTCGTGGAGCACATGCGTCTGATCCTGGCGACGTCTATGGTGCGGCTGCAGCGTCCGGAGGCCCCGGGGCTGGGGGAGTGGCAGGAGGACTCTGGGATTGGCCTGTACCGCGCTCCTGAGGAGGGAGCCACAGCTTCTGCAGCCACAGTTGGGGGCGGAACCGCTGCCTCTGGACAGACCAGTGGCCTTGACCATAAGGTGACAGTGCTGGAGAATATAGTGTGTGTACTGaacagagaagtagagaggagCTCTCTCACTTTAGAGGCCTTCTCGCGACAACATCGACTAGACCAGGACAAGATGGAGAACCTCAGCAACAAGGTGCGTCAACTAGAGCGTACTCTCACCATGCGGGATCTACAGCTAGCCGAGACAGACCAGACTCTGAGGGAGCTCCAGTTCTGCACCTTTGACGGTGTGTTTGTTTGGAAGATCGCTGACTTCTCACGCCGCCGGCAGGACGCTGTGGCCGGGCGAACACCCGCCATGTTCTCACCAGCGTTCTATTCCAGTAAATATGGCTATAAGATGTGTCTAAGACTGTATCTGAATGGGGATGGAACAGGTCGAGGGACACAcctttctcttttctttgtggTGATGAGGGGCAAGTGTGACGCTCTGCTCAAATGGCCCTTCAGTCAGAAAGTGACTCTGATGCTGCTGGATCAGAATAACAGGGAGCATATTATTGACGCCTTCCGACCTGATGTCAGCTCCACCTCTTTCCAGCGGCCAATCAGTGAGATGAACATAGCCAGTGGCTGCCCACTCTTCTGCCCATTAGCTAAACTGACAGGCAAGAGCTCCTACCTTAGGGATGATACCATTTTCATCAAGGCCATTGTAGACCTCACAGGCTTGTAAGAGGCTGTGGAAGCCCCCTACACAAAGGCACAAAACAcagactaatatatatatataacttctGAAAATTACATGATATAAGTAATATTATAATAAAATgcatatatttattattataagTATATCATAGACACTGTTTATTTTGCTGGCTGAAGGCACTGGAATGAAAATGAATTCTGCTAGCAGATCTTTTCAATTGGTTAAAACAGAGAAAAATAGGGTGAGTGATATGGCCAACCCAAGTGCTGGCTCTGACTACTAGAAGTGCAGTATTATGCAGAGGATGCCGTGACTTTTTTTGAATGCAAGGCAATAAGAGCTTGTCAAAATTGGTCATCAAATGGGCTCATTGCACATAAATCACGTTATGTATTTCTATTATATTTTCCAATATTTCTTAATTTGGAGACACTGACGTGATCGTGCCAAAATGACACTGTCAAGTTGTGAAACTGCTTTTACTTGAGGTAGCACCTGTTGTACACATGGACAAGGATGTGTTGGCGATCCTGCCCATTCATCATGTGAGCAGGCACAACTTTTTAAATGGCAAAACCCACAGGTCGGTAATTTATATTAAAGAAATGTTCCATAAACTCCGCCTAGTGCTTTCTCAAAAAAAGCTACAAGccggtcccaagcccggataaaggagGATGGGTTAGGTTACGCGTAAGACTAGCAGGCGcaatctgtaaaaaaaatattttaaaaataaaaataaattgtggGGGGGCAACAGTACAATTATACTAGTTGATCATAGATGGCAAATGCTCCTTGAGGAGCAACGGGTCTAACTAAGTAGCTTAGAGCATTCCAAAAACATAAGTACGCTTTCCCATTTAAACAGTTGTGCACTCGCATccagtagcggtgcgtgggtaaaatcactgggggggggggattgaatACTTACAATGTTGTGAtcattgcgttgtttgctctataacctgttagttcatatgccttgacaccgtaatatatatataggcctaaggccgagacaataagaagacacagtagcagaataaattcaaccacagcTTTTTTTCATCACAAAACaggagagcaacctctgtctggtgaagtccacaaaagatattgcatgtaacagttacatgacctacagcatgatcaagcaagttaatgtttctgtcaTTTTCAGACTAcgaaacaactattgatttagaaccactgagttaccgcaagtcacaaagaaaacaggagctgcctccactattccagcaccatttcaacattatCTAATCACCTAttcttagtctaatacagtgacaactaaaatataccaCAAGTATACcgcaagtagaaaaacatgttgactcaccctacaccctaccctagaaacgccaatgccatcctacACTTTCCTGTTGCCTAAACgatctatgactctgtcatacactttaaaaaatgttttttgttgtccaaggctacctggctaaaatactagttcactagcctaacttcctttcattggCAATGATgcgccaggccagctagttaacattagcctaacatttctacatgttgaacttccatcctctcggGCCAGGTACACAATgaatgaatttatggttggatcagaattcccattataatcattggccagtacggataATTAAGTAAACCACAAGTCCAATTCTCTATCCATTGCTAATTTAGGAatgggacaattttagctagctagccactgggGGACAACGACACAATGGGATGCAATTAATTCAAGTTTTCTGTCAATGATGTTTGGCTtctaatgtgatgtgattggtctgaagccaaatccaaactggcttaccttgagatttttttttttggtgtgccaggaccattcacagctgatctcactcagtttagctcaacgttGATTGGCTATTTTATAGAAAaaatcaagggaggccaaatgctccttggcatccatgaatacacaccactgctcACATCCATGCTGTATGCGCTGTACTTAAAGCCTAATAAATCATTGAACAAGGTGGGTGCATAATACTGTGCATGTGCACAACAGGCTTTACCTTGAATTAAAGTAATTGAAGCAGTATCAAGTTTGTTACAGTTAATGTCTTCTACGAAGCATGGCAAAGAATTATCAAAATAGCTGCAAAGCGGACCAAATTTGACACCTCTTAATTGACCTTTCAAAGGCACCACATCCTCTGCATTATCCTGAGCTTCAGGCAGACATGGGCAATACTTAATTTGAGCATTATATGCCATTTTGACtgaatggcgccggaggagatggctgccgatTTTACGGGCccttaaccaattgtgctattgtgtgtgttttcgtGTTATTTGTAACATATTTTGTACCTCGCTactattattttactgctgctctcttagttaaaaaatatattttttttacttaacaatTATTTTTCTCAACTGCAATGTTagtaaaggcttgtaagtaagcatttcacggtaaggtctacacctgctgtatgcagcgcatgtgacaaatacaattagattttgatttgatcCGCTCGAGGCTCAGATGAACCGATCATCGTATCTTTCCTCAGTATACTTTTTAGTCTAGTTCTGTTAGCTAGGTAGATGAACAGTGCCTATATAGCTGTAGTGTACAAGAGTACGCCACAGTAGACATGTACCCAATTAAGATATATGATTAAATATACtgtaataaaatacagtatattaactaacAATTATATGAACTATATGTTATAGGCTAAGCTGAGAAAGCTCCTGCTCTTTTCAAATACGAAATGCATATTTTATCTCAAATTTCAAGATTAGTATTTATACTGAGCTAGCGCATAAATAAATGGTAAGTTAGCAGACTATTATGCCAGCATAATTGTATTGAATAGAACAATTAAGTGTTTTTGAATGTCATACTTGTGACAGGTTAACCTTATCTATCTTGTGTAGAGTGGATGAGAATTATTTAAGGACATCTCCTTCACTTGTTGTTGTTGGTCATTATTCAGCTATAACTAATATACAAAGACATTTGATGTGTTAATGTAGATTATGTATGTTTTTGTCACTAATGGTAGAGTCATATGTAGGTGTATTGTTGAAGGGCAGGTTACAGAAATATAACAGCAGTGTGTAATGTTAATTATATGCATGTGTTAAAGGAAAGCAATTCTGATTAATATAGTTAGTTACCTGTTTAAGTTTGCCATTGATTTATTTGTCTTATTTAACCAAGGAAGTCGCACTGATCTTGCAGGAGTCATTTTGTTTTATGCTCTCATGATTGTGACTGTCAAGACTTCTGTGCTGTAGAGTCTTGTTTTTATTGGAACATTTTGAGGTGTTTGATTTGATTGCATGTTAATTCAAACGCCTATCTAGCATGGAGTAGTCCTGGGATTATATAGAAGATGTATTGTATCTATAACAATGAATTGGAGGGGGGAAAAGTATACCTGTTTCTCAATACATTATCTACCAATGAGAATGGTGTtgtgaaaataaatacatttgataaaa
>XM_021602370.2
GGTTAAAAGAGTGTTGAAAAGGGCAAGGGAATAATGAGTtaattttaaatggactggaaatGTGTCACTCATAATGGAACTATTGTGTGTGCGCCTTCTATGTGCTACAGTCAATTATGGTTGCATTTCATATCTTGGCTAGAAGACAACGCATCAGCAAATATCGAATGTTAGCCATCCTACTATATCAGGAAGCTGTATCAGAAGTTGATGGAGGAGCATGGCCCTGCCCTCTTTAGATTCCTCCCTCCAAGGGATCCCGAAGAATGTGCTGGCTGTTTCCATGGAAACTAAGTACCAATGCCAGCAGTGTCACCAGGTCCTGAGGAAGCCGGTCCAGGCTCAGTGTGGACATCGCTTCTGTGTCCACTGTTTCAAACTGCTCACCAGCTCTGGACCCAAGCCCTGTGAAGCCTGTCAACAGGAGGAGATATACGAGGAGCCCCAGTCCATTCTCAATAGCAATGAGgcTTTTCCAGACAATGCAGCCGGTAGAGAAATCGCCAGCCTGCCTGCCAAATGTTTCAATGGGGGCTGCTCTTGGACAGGTTGCATCAAAGAATATGAGGCACAACACGAGGGCAAGTGTGAGCATGAGCACGTACCATGTGAAGCCTGCCAGGTCCTCATCCTGCGTAGTGAAAAAGAGAGGCATAACGAGAGAGAATGTGAAGAAAGAACATTGAACTGCAAGTACTGCAAAGTCTCCTTCAACTTCAAGCAGATCAAGGCTCATGATGAAATCTGCCAGAAGTTTCCCATGCAGTGCAAGGACTGTGGAAAGAAAAAGATCCCACGGGAAAAGTTTCTAGATCACAGCAGATCCTGTGCCAAGTCTAAGACTGCATGTCCATTCAGTGAGGTTGGCTGCAAGGCTGTGATTGATAATGGAAAACACAGTGACCACGAGCAGACGAACGTCGTGGAGCACATGCGTCTGATCCTGGCGACGTCTATGGTGCGGCTGCAGCGTCCGGAGGCCCCGGGGCTGGGGGAGTGGCAGGAGGACTCTGGGATTGGCCTGTACCGCGCTCCTGAGGAGGGAGCCACAGCTTCTGCAGCCACAGTTGGGGGCGGAACCGCTGCCTCTGGACAGACCAGTGGCCTTGACCATAAGGTGACAGTGCTGGAGAATATAGTGTGTGTACTGaacagagaagtagagaggagCTCTCTCACTTTAGAGGCCTTCTCGCGACAACATCGACTAGACCAGGACAAGATGGAGAACCTCAGCAACAAGGTGCGTCAACTAGAGCGTACTCTCACCATGCGGGATCTACAGCTAGCCGAGACAGACCAGACTCTGAGGGAGCTCCAGTTCTGCACCTTTGACGGTGTGTTTGTTTGGAAGATCGCTGACTTCTCACGCCGCCGGCAGGACGCTGTGGCCGGGCGAACACCCGCCATGTTCTCACCAGCGTTCTATTCCAGTAAATATGGCTATAAGATGTGTCTAAGACTGTATCTGAATGGGGATGGAACAGGTCGAGGGACACAcctttctcttttctttgtggTGATGAGGGGCAAGTGTGACGCTCTGCTCAAATGGCCCTTCAGTCAGAAAGTGACTCTGATGCTGCTGGATCAGAATAACAGGGAGCATATTATTGACGCCTTCCGACCTGATGTCAGCTCCACCTCTTTCCAGCGGCCAATCAGTGAGATGAACATAGCCAGTGGCTGCCCACTCTTCTGCCCATTAGCTAAACTGACAGGCAAGAGCTCCTACCTTAGGGATGATACCATTTTCATCAAGGCCATTGTAGACCTCACAGGCTTGTAAGAGGCTGTGGAAGCCCCCTACACAAAGGCACAAAACAcagactaatatatatatataacttctGAAAATTACATGATATAAGTAATATTATAATAAAATgcatatatttattattataagTATATCATAGACACTGTTTATTTTGCTGGCTGAAGGCACTGGAATGAAAATGAATTCTGCTAGCAGATCTTTT
>TU439240
ggcttgtgagtaagcattttactgtaaggtctactacacctgctgtatgcagcgcatgtgacaaatacaattagattttgatttgatcCGCTCGAGGCTCAGATGAACCGATCATCGTATCTTTCCTCAGTATACTTTTTAGTCTAGTTCTGTTAGCTAGGTAGATGAACAGTGCCTATATAGCTGTAGTGTACAAGAGTACGCCACAGTAGACATGTACCCAATTAAGATATATGATTAAATATACtgtaataaaatacagtatattaactaacAATTATATGAACTATATGTTATAGGCTAAGCTGAGAAAGCTCCTGCTCTTTTCAAATACGAAATGCATATTTTATCTCAAATTTCAAGATTAGTATTTATACTGAGCTAGCGCATAAATAAATGGTAAGTTAGCAGACTATTATGCCAGCATAATTGTATTGAATAGAACAATTAAGTGTTTTTGAATGTCATACTTGTGACAGGTTAACCTTATCTATCTTGTGTAGAGTGGATGAGAATTATTTAAGGACATCTCCTTCACTTGTTGTTGTTGGTCATTATTCAGCTATAACTAATATACAAAGACATTTGATGTGTTAATGTAGATTATGTATGTTTTTGTCACTAATGGTAGAGTCATATGTAGGTGTATTGTTGAAGGGCAGGTTACAGAAATATAACAGCAGTGTGTAATGTTAATTATATGCATGTGTTAAAGGAAAGCAATTCTGATTAATATAGTTAGTTACCTGTTTAAGTTTGCCATTGATTTATTTGTCTTATTTAACCAAGGAAGTCGCACTGATCTTGCAGGAGTCATTTTGTTTTATGCTCTCATGATTGTGACTGTCAAGACTTCTGTGCTGTAGAGTCTTGTTTTTATTGGAACATTTTGAGGTGTTTGATTTGATTGCATGTTAATTCAAACGCCTATCTAGCATGGAGTAGTCCTGGGATTATATAGAAGATGTATTGTATCTATAACAATGAATTGGAGGGGGGAAAAGTATACCTGTTTCTCAATACATTATCTACCAATGAGAATGGTGTtgtgaaaataaatacatttgataaaa
>TU439243
GTGTCATGACGGTTAAAAGAGTGTTGAAAAGGGCAAGGGAATAATGAGTtaattttaaatggactggaaatGTGTCACTCATAATGGAACTATTGTGTGTGCGCCTTCTATGTGCTACAGTCAATTATGGTTGCATTTCATATCTTGGCTAGAAGACAACGCATCAGCAAATATCGAATGTTAGCCATCCTACTATATCAGCTTTGCAAGTTACATTACAAATGTTCCAGTAACATCACATTGAAGCACGTATTGagctgccctggtccaAACTGCCTagggaagcaatgtcagcacaagaactgtacgtcgggagcttcatggaatgagtttccatggccgagcagccgcacacaagcctaagatcaccatgcgcaatgccaaacgtcggctggagtggtgtaaagctcaccgccattggactctaccTGCCAGAATGTATAGTGCCAACCttagtttggtggaggaggaataatgatctggggtggttttccatggttcgggctaggccccttcattccagtgaagggaaatcgtaacgctacaggatataatgacattctagattctgtgcttacaactttgtgaaagcagtttggggaaggcacttTCTTGTTTcgacatgacaatgcccccgtgcacaaagcgagttccatacagaaattctttgttgagatcagtgtggaataacttgactggcctgcacagcgCCCTGACCTCCCattgaacacatttgggatgaattggaacgctgactgcgagctaggcctaatcgcccgacctcactaatgctcttgtggctgaatggaagcaagtcctaaTGCTACGTTCATGACCAAGTGGGAAGGTTGTAGTTACCAGTTATGTCGTAATGAGTTTTGTATATTAATGTGCTTTTAAGTGGGAAATACAATCAAGGATAGAGGTCATTAAAAAGCTAGCTATGATTGTTTTGCTCTTTTTTTTTCTGCCCATAAGTATATCCAGAGCTGCTTTTGATTTCTGAATCAAACGGAAGATGAAAGGACACATCAGTACATTAGAagtttcaataaataaataattagctAGCTGAATGACCTGCCAAGACGGCACATGCCTAATCTGTTCTGTGCTGGTTACATTGTCTAGCTGGCTACAGAACAGTTTTACCTATCAATTTAGAAAATGATCACAGC

Function

symbol description
traf2 Enables several functions, including enzyme binding activity; tumor necrosis factor binding activity; and tumor necrosis factor receptor binding activity. Involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of macromolecule metabolic process; and protein ubiquitination. Located in cytosol. Part of several cellular components, including IRE1-TRAF2-ASK1 complex; TRAF2-GSTP1 complex; and tumor necrosis factor receptor superfamily complex.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007250 activation of NF-kappaB-inducing kinase activity biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602372.2 False 5315 mRNA 0.42 12 29070573 29092800
XM_021602370.2 False 1982 mRNA 0.49 11 29073899 29092847
TU439240 False 1073 lncRNA 0.33 2 29070573 29149445
TU439243 True 1178 lncRNA 0.43 3 29090753 29092857

Neighbor

gene id symbol gene type direction distance location
LOC110523568 NA coding downstream 10788 29055943 ~ 29059785 (-)
LOC110523567 LOC106566747 coding downstream 25360 29042325 ~ 29045213 (-)
tprn LOC106566736 coding downstream 29193 29012019 ~ 29041380 (-)
anapc2 LOC106566731 coding downstream 65937 28994099 ~ 29004755 (-)
LOC110523562 LOC106566722 coding downstream 76957 28935569 ~ 28993616 (-)
bspry LOC106566771 coding upstream 10716 29103563 ~ 29116365 (-)
LOC110523575 LOC106566797 coding upstream 78572 29171419 ~ 29174255 (-)
LOC110523577 LOC106566842 coding upstream 108903 29201750 ~ 29214984 (-)
LOC110523579 NA coding upstream 170366 29263213 ~ 29272515 (-)
LOC110523591 LOC102784149 coding upstream 729006 29821413 ~ 29831150 (-)
G386725 NA non-coding downstream 25415 29009238 ~ 29045158 (-)
G386729 ssna1 non-coding downstream 61491 29006577 ~ 29009082 (-)
G386403 NA non-coding downstream 292437 28773618 ~ 28778136 (-)
G386389 NA non-coding downstream 300004 28756371 ~ 28770569 (-)
G386374 NA non-coding downstream 336730 28733594 ~ 28733843 (-)
G386777 NA non-coding upstream 41873 29134720 ~ 29135479 (-)
G386797 NA non-coding upstream 76829 29169676 ~ 29169913 (-)
G386855 NA non-coding upstream 82390 29175237 ~ 29175563 (-)
G386919 NA non-coding upstream 202283 29295130 ~ 29295347 (-)
G386222 NA other downstream 579201 28490966 ~ 28491372 (-)
G386126 NA other downstream 715828 28351775 ~ 28354745 (-)
G385769 NA other downstream 855754 28214543 ~ 28214819 (-)
G387064 NA other upstream 300248 29393095 ~ 29394816 (-)
G387052 LOC106566935 other upstream 341758 29434605 ~ 29435311 (-)
G387321 LOC100136012 other upstream 510336 29603183 ~ 29644748 (-)
G387939 LOC106567059 other upstream 1117916 30168119 ~ 30211886 (-)
LOC110523582 LOC106566947 coding upstream 753542 29902987 ~ 29976678 (-)
G386921 NA non-coding upstream 146048 29295493 ~ 29296128 (-)

Expression


Co-expression Network