G387939 (LOC106567059)


Basic Information

Item Value
gene id G387939
gene name LOC106567059
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30168119 ~ 30211886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU440597
ACCTGCCCCCGGAGTTGTTTCCACCCGGCCTCAGCCAGGAGTCGTCTACAGGTGGCGGCATGgcggtagtgatggtggtggtgctgATGTCTCCGATGATGTTTAGGGCCTCTTTCAGGGCATGGTACATGCGGAGCATCTCATCGCGGTGATGGGCCTGCTCCTGGGACTCCTCCATCAGGCTGTTTTGGTCCCCAGAGTGGTACAGGTTGGCCAGCAGCTCCGCGTTGATGAACTCCTTGGTATTGTTGATCATGAGGTACATGATGGTCTTGGGCATGAGGTCCCTGATGGTCTTGTTGACGATGGCCATGTAGGAGTCCACCAGGTTGCGGATGGTCTCCACCTGCCTCTCCAGCTGGGGGTCCATGGAGTGCATGAGGTTATCTGAGCCATTCTCTCCGTCTCCACTGTCACTCTTGCCCTCCTTCTCCGTGACACGTTCAGGATACACTCCAGCTCTAAGGAAAGAGGCCTTCCACCCATCTATCTCCTCCTGACTCTCGCAGGCCAACTCCAGCTGACGGTAGTCCTTATATACATTTCTTTGCTCTGTGTTGAACAGGGCAAAGATCTGCTTGCTGGACATGAAGCTCTTCTCCACATCCCTCAGCCTCAGGTTGTCCACCTGGAGCATgtacttcttctctttctcCTCATCGTCCTTGTACCAGGACAGGGACTCAGCGGTCAGGACGAACCAGTACTCCTTTGCTCCTCCCTTCATGATGCCAATGTTGTTGATGGTCAGCCAGCCCTTCCTgatcaccaTAATCTCATCCTGCTAAAGTAGAATAGTTGTAGCAGGAGAGGTGAAGAAAAAGACACAAGAGAAATCACTCAGAagaaacagagcagaacagaaataGAGTGGGAACACTAGACAGTTAAAACACAGAGTACTAAATAACAAACAGGCTAATGAACAACCAGGCTAATGAACAAGCAGCCTAAATAACAACCTGGCTAAAGAACAACCAGGCTAATGAACAAACAGGCTAATGAACAAACAGGCTAATGAACAAACAGGCTAATGAACAACCTGGCTAATGAACAAACAGGCTAAAGAACAAGCAGCCTAAATAACAACCAGGCTAATGAACAACCAGGCTAATGAACAACCAGGCAAAGAACAAGCAGCCTAAATAACAACTTGGCTAATGAACAACCAGGCTAAAGAACAAACAGTCTAAAGAACAAGCAGCCTAAATAACAACCTGGCTAATGAACAACCAGGCTAAAGAACAAACAGGCTAAAGAACAAGCAGCCTAAATAACAACCTGGCTAATGAACAACCAAGCTAATG
>TU440598
GAAAATCAGATGGCCCTCCAGAAGATTACTTTGACACCACTAGCCTGAAGTGACCACTGGGGAGTGGGACTCACATTGTTGATCATGAGGTACATGATGGTCTTGGGCATGAGGTCCCTGATGGTCTTGTTGACGATGGCCATGTAGGAGTCCACCAGGTTGCGGATGGTCTCCACCTGCCTCTCCAGCTGGGGGTCCATGGAGTGCATGAGGTTATCTGAGCCATTCTCTCCGTCTCCACTGTCACTCTTGCCCTCCTTCTCCGTGACACGTTCAGGATACACTCCAGCTCTAAGGAAAGAGGCCTTCCACCCATCTATCTCCTCCTGACTCTCGCAGGCCAACTCCAGCTGACGGTAGTCCTTATATACATTTCTTTGCTCTGTGTTGAACAGGGCAAAGATCTGCTTGCTGGACATGAAGCTCTTCTCCACATCCCTCAGCCTCAGGTTGTCCACCTGGAGCATgtacttcttctctttctcCTCATCGTCCTTGTACCAGGACAGGGACTCAGCGGTCAGGACGAACCAGTACTCCTTTGCTCCTCCCTTCATGATGCCAATGTTGTTGATGGTCAGCCAGCCCTTCCTgatcacCTTAAACCGATCATTaactgctcctctctccggctgaaTGGGGATGTGGAGAGAACATTACACAGCTATGCCACGTACGGAGCACAGAGCATAGGCCATTCGTAATGCACAGGGGCAGGCAGCACACTGGCATATTTGCACATTGGCACACTGGCTGGCTAGAGTGGGGTACAGCGAGGGCAAGGCAGGCAGGGACAAAGGGGGACAAAGAGCCATATGGGGCTGTAGGGCCGCTTTCAAACCAAAACTCATGCAGCACATATGCTGATGCATCTTTGTGTCGAGGTTGCCCACGGAATGCGtcgttgtgtggtgtggtggtggtggtggggagggggggattATCAGCTGGTTATTAACTGACAGATGCCTAGTCATGGTGTGTCATGTCAAAACTTCCACCTTATCTGTTTTTTCAAACTTTTCTGTTGGACAGCGCAACCAACTGCTTAGTTGACCCTTCCACCAAGGCATTGTTAGTCTTTATATTGCATCATATTGGGTGGTTTGAATGCCCTAGGTGGGTAGAAAGGTAGGTCAATAAAAGATACCAGGAGAGGCTGTTGGTCAAAGCAGCTGGAGGAGAGCAGAACTAAATGCAGCCGGCTAAACAGGAAAACCTATGCcctttatttgttattttaccaggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagttacaggggagaggaggaggatgaatgagccaattgtaaactggggattattaggtgaccgtgatggtttgagggccagattgggaatttagccaggacaccagggttaacacccctactcttacgataagtgccatgggatctttaatgacctcagagagtcaggacacccgtttaacatcccatctgaaagacggcaccctacacagggcagtgggaTATTGGGATATTtcttagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatccagggactaaacaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtatgctgctggcaaagaccagttagggtagggtagggtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagggtagggtagggtagagtagagtagagtagagtagagtagagtagagtagagtagagtagggtagggcagagtagagtagagtagagtagagtagagtagagtagagtagggtagagtagagtagagtagagtagagtagggtagggtagggtagagtagagtagagtagagtagagtagagtagagtagagtagagtagagtagataaCGAGTGTGAGAGAGATGTGGGCTTTGGAGAACTGGTCTTAAATAGAGAAGGCAGCAGGCAGCACCCCCCTCTAAAGCTAAAGCCTCCATCTCTCTGCGAGCTGTTGTCATTGGAGAACACATGGCTGCCTTCTTTATCTGGTGTCAAGCTAAGGCTGGGGGGGCGACGAGCAATCACTCAGCCAAGGAAAATGAGGCTTGATTGTGAGGCCACGGCTGTGAAATGTAACGTCTCCAAATGGTGCCGTTTCTATGGGAGAGAGAAAAGTCTGCACATAAAAATATGTTGTGCATTAAGGAACCTGGAGGCCTATCTGGTCTTAacccctctgtgttctgtctaTGTCTGGGGGTGTATTGTAAAATAATGGTTCATGCTATTTTTTTTACTCATGCTGGTTTCTAATAGGAGATGAGCAGTGCTAGCTGAGCATGTTTCTGTTGTGTTGGATGGGAGCGCTGCCTGGAGGAGGGAGGCAGCTGAGGAAAGAAGCAAATGCCCAGAGAGCTCCCTAGCTACCTACCCATCTACAGTTATGGGAggctctctccacacacacattctaacaaacacacacacacacacacaaggaaaccaacacattctaacacacacaaacacataaaaaCAAGcacgcacactaacacacactcacacatgctaacacacacgcacacacacactactcaccaTAATCTCATCCTGCTAAAGTAGAATAGTTGTAGCAGGAGAGGTGAAGAAAAAGACACAAGAGAAATCACTCAGAagaaacagagcagaacagaaataGAGTGGGAACACTAGACAGTTAAAACACAGAGTACTAAATAACAAACAGGCTAATGAACAACCAGGCTAATGAACAAGCAGCCTAAATAACAACCTGGCTAAAGAACAACCAGGCTAATGAACAAACAGGCTAATGAACAAACAGGCTAATGAACAAACAGGCTAATGAACAACCTGGCTAATGAACAAACAGGCTAAAGAACAAGCAGCCTAAATAACAACCAGGCTAATGAACAACCAGGCTAATGAACAACCAGGCAAAGAACAAGCAGCCTAAATAACAACTTGGCTAATGAACAACCAGGCTAAAGAACAAACAGTCTAAAGAACAAGCAGCCTAAATAACAACCTGGCTAATGAACAACCAGGCTAAAGAACAAACAGGCTAAAGAACAAGCAGCCTAAATAACAACCTGGCTAATGAACAACCAAGCTAATG
>TU440596
ACCTGCCCCCGGAGTTGTTTCCACCCGGCCTCAGCCAGGAGTCGTCTACAGGTGGCGGCATGgcggtagtgatggtggtggtgctgATGTCTCCGATGATGTTTAGGGCCTCTTTCAGGGCATGGTACATGCGGAGCATCTCATCGCGGTGATGGGCCTGCTCCTGGGACTCCTCCATCAGGCTGTTTTGGTCCCCAGAGTGGTACAGGTTGGCCAGCAGCTCCGCGTTGATGAACTCCTTGGTATTGTTGATCATGAGGTACATGATGGTCTTGGGCATGAGGTCCCTGATGGTCTTGTTGACGATGGCCATGTAGGAGTCCACCAGGTTGCGGATGGTCTCCACCTGCCTCTCCAGCTGGGGGTCCATGGAGTGCATGAGGTTATCTGAGCCATTCTCTCCGTCTCCACTGTCACTCTGCTGGGGGACAACACCAGGACCAGGGAGGAGGGGGTTAGAGGACAGGGAAGAG

Function

NR:

description
dynamin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440597 False 1307 lncRNA 0.49 7 30168119 30211886
TU440598 False 3243 lncRNA 0.47 7 30168119 30211065
TU440596 True 473 TUCP 0.58 2 30210763 30211886

Neighbor

gene id symbol gene type direction distance location
LOC110524741 LOC106567126 coding downstream 34582 30109646 ~ 30133537 (-)
surf2 LOC106567032 coding downstream 63431 30102342 ~ 30104688 (-)
LOC110523585 LOC106567027 coding downstream 68831 30096053 ~ 30099288 (-)
LOC110523589 LOC106567022 coding downstream 72568 30082369 ~ 30095551 (-)
LOC110522908 NA coding downstream 89353 30035717 ~ 30078766 (-)
LOC110523594 LOC106567038 coding upstream 6217 30218103 ~ 30243372 (-)
haus4 LOC106567141 coding upstream 32644 30244530 ~ 30257109 (-)
LOC110523598 LOC106565912 coding upstream 643656 30855542 ~ 31286199 (-)
LOC110522855 LOC103355419 coding upstream 1385172 31597058 ~ 31597647 (-)
LOC110523605 LOC106565751 coding upstream 1567379 31779265 ~ 31942907 (-)
G387816 NA non-coding downstream 308293 29844443 ~ 29859826 (-)
G387728 NA non-coding downstream 459106 29708790 ~ 29709013 (-)
G387724 NA non-coding downstream 466814 29701076 ~ 29701305 (-)
G387723 NA non-coding downstream 467642 29700166 ~ 29700477 (-)
G387373 NA non-coding downstream 493269 29674618 ~ 29674850 (-)
G387938 NA non-coding upstream 806 30212692 ~ 30217966 (-)
G388003 NA non-coding upstream 65206 30277092 ~ 30277316 (-)
G388006 NA non-coding upstream 67919 30279805 ~ 30280114 (-)
G388014 NA non-coding upstream 71443 30283329 ~ 30283585 (-)
G388020 NA non-coding upstream 74884 30286770 ~ 30287340 (-)
LOC110523591 LOC102784149 other downstream 339811 29821413 ~ 29831150 (-)
G387321 LOC100136012 other downstream 523371 29603183 ~ 29644748 (-)
G387052 LOC106566935 other downstream 732808 29434605 ~ 29435311 (-)
G387064 NA other downstream 773303 29393095 ~ 29394816 (-)
G386725 NA other downstream 1122961 29009238 ~ 29045158 (-)
G392227 NA other upstream 3139531 33351417 ~ 33352338 (-)
G392245 NA other upstream 3168906 33380792 ~ 33381565 (-)
G392503 LOC106565394 other upstream 3522276 33734162 ~ 33762381 (-)
G392858 NA other upstream 3935577 34147463 ~ 34148628 (-)
G395297 NA other upstream 5640904 35852790 ~ 35853357 (-)
LOC118964583 NA coding downstream 31145 30177488 ~ 30179618 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020010 NA coding CM030127.1 CM030127.1 6280523 ~ 6291842 (+)