LOC110523598 (LOC106565912)


Basic Information

Item Value
gene id LOC110523598
gene name LOC106565912
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30855542 ~ 31286199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977273.1
TAGTATAAACGAACAAGCAGTTTAAGAGCCGCACTCAAAGCTAGAGAACCGTGCATTGGGAGCGGGATGGCAGGGACAGTAAAGCACCACGTCCTCCTCCTCATGGGGCTCTTGCTGACAGGGACCGCTACAGTCCGGGGAAGCAGAGGGGGAGCGATGcttgatgaggagagggagaaggaaaacgACGCAGAGAGCCCGTGTGAAGTTAAAACCGTTACCGTTTCTACCCTGCCTGTACTCCGCGAGAATGAGTTCAGTTTCACCGGCGGTGGCTCGGGGAGCGtggctggaggaggaggggagtccCGACTCCTTTTATTCGTTAGAACAGACCTACCTGGACGAATTTCCGTTATGGATGATCTTGACAACACCGCTCTCCCATACTTCACACTGGAGATGTCAGGTTTGGGGGCAGACATCTCTCAGGTGCATTGGAAGCAGCAGTGGCTGGAGAACGGAACGCTGTATTTCCACGTGTCCATGAGCACCTCTGAGCAACTGATACAGACAACCGTGCCCACGGCCCAGGAGCCTGCTCACGTCCTGCACGAACACATGCACCTGCTGCACATCTCTGTTATGGGAGGCCTGatcgctctcctcctcctcattcttcTCTTCACACTGGTTCTGTACACCCGTCACCGCTGGTGCAAGCGCCGGCGCATCCCCCAGAAGAGCGCCAGCACCGAGGCCACCCATGAGATCCACTACATCCCCTCTGTGCTGCTGGGACCCCAGGGTAGGGACAGCTTCCGGGGGTCCCGCCAGCTACAGCACAGCTCTGTCATCGGCATGCCCATCCGGGAGACCCCCATACTGGATGACTACGACTGTGATGAGGACGATCAGatgggtcacacacacacctccacacccaACCAGGTCCACAACCAGCTGATTGATGGGAAAGTCCAGGGCCTGGATGAGTATGGACCCAGCCAGGGGACACATACCCACAACCAGCACACTGACAGCCTGAGGAAGGGGGAGGACAGCCTCCAACACAGTCTGGATAAAAGAGCCTTTGACCCCAAGCAGGAGACGGTCGAGGCATTGATGCAGCGGTTTAAGGAGAGTTTCCGTCCTAACACGACCATGGAGATCGCCCACTTTCAACACGTCACACACAGCTCCTCCACAGGACGCAAGAGAGGCCCAAGCCACACCAGAGTGGCTGGTAGTGTGTTTGGGCGCCAAGGAGACTCGGGGTCAGAGGGTGATGATGAGACCCAGCTGAAGTTCTACACAGAGCAGCACAGAGGCCGCCGGCGCAGCAGAGgtTGTCCACACAGCCCGATGAACAAGGCCACTCTGACGTTGATCACCATCAGtacgtgtgtcctggctgtgGTTTACGGCACGCAGCTCTCCTGCTCTCTCACCGTCAAGGTTACGCTCCACGTGCCCGAACACTTTGTTGCCGACGgaagTAGTTTTGTGGTGAGCATGGGCAGTTTCCTGGACGTGTCTAACTGGCTGAACCCTGCCAAGCTGATCCTATATTACCAGACCAACTCCTCCACCCAGTGGGTCAGAGATTACTGTGGCCAGAGGACCACCGAGCCCTGTGAACAGCTGTGTGACCCAGAGACGGGTGAATGCAGCTGTCATGAGGGCTATTCCACTGACCCGGTGCATAAACATCTCTGTGTTCGCAGTGACTGGGGACGCAACGAAGGTCCCTGGCCCTACACTAACCTGGAGAAGGGTTATGACCTCGTCACAGGGGAGCAAACGCCAGAAAAGATATTCAGGTCGTCCTACAGCCTAGGCCAGGGTCTGTGGCTGCCAGTCAGTAAGAGCTTTGTGGTGCCACCGGTGGAGCTGTCAATCAACCCCATCGCCAGTTGCAAGACTGATGTGCTGGTGACAGAGGACCCTGGTGATGTCAGGGAGGAGGCCATCATGTCCACCTACTTTGACACAGTAGATGATCTCCTGGCGTCTTTCGGCCCGGTCCGAGACTGTTCCCAGGACAACGGGGGCTGCAGGAAGAACTTCAAGTGTGTGTCAGACCGCAGAGTCGACTCAACAGGCTGTATGTGTCCTGACGGGCTGCGGCCGATGAAGGATGGCTCGGGTTGCTATGACTACTCAAAGGGCACGGACTGCACGGACGGCTTCAATGGGGGCTGTGAGCAGCTGTGTCTTCAACAGCTGGTGCCCCTACTAGACAACCCCAGCTCCAGCAACATCCTCATGTTCTGTGGGTGTGTGCAGGAGTACAAGCTGGGGGCAGACGGTCGCTCTTGTCTCCTCCAGACAGAGAACTGTGAGGGGCCAAAGTGCCAGAGGCAGGACATTCGTTTCAATGACACCCTGTTTGGGGAGATGCTGCACGGCTACAACAACAAGAGCCAGCAAGTCAACCTGGGACAGGTCTTCCAGATGACCTTCCGGGACAACAACTTCATCAAAGACTTCCCCCAGCTAGCAGATGGACTGATGGTTATCCCGTTACCTGTGGAGGAGCAGTGTAGAGGAGTGCTGTCTGAGCCACTGTCCAATGTACAGCTCctcacagGTGATGCTAAGTTCAATGAGGCTATGGGCTACCCCATGGTTCAGCAGTGGAGAGTGAGGAGCAACCTGTACAAAGTCAAGCTCAGCGCCATCACCTTGTCTACAGGCTTCTCCAAGGTTCTGAAGACACTGACTGcagagagcagcagagaggagCTGCTGTCCTTCATCCAGCAGTACGGCAGCCATTACGTATCCGAGGCCCTTTACGGCTCCGAGCTCAGCTGCACCATCTACTTCCCCAGCAAGAAGGCTCAACAGCAGCTCTGGCTGCAGTACCAGAAAGaGGTGACAGACCAGGGCAGCAGGCGCGAGCTCAAATCCATGCCCTTCATCAGCTACCTGTCTGGGCTGCTGAAGACCCAGCTACTGGCGGAGGACCTGGTGAGCGGTGTGGAGATTCGCTGTGAGGAGAAGGGCAGCTGCCCTTCGGCCTGCCACCTGTGCCATCAGGCAGGCCGTGAGCAGCCCTTGCCCATCCCCGTCCTGCTGGAGGTCAGCCGCATCGTGCCCCTTTACAGCCTGGTGCAGGACAACGTCACCAAGGAGGCGTTCAAGAGCGCCACCATGAGCTCATACTGGTGCACAGGCAAGGGCGATGTCATCGACAACTGGTGTCGCTGTGACCTGAGTGCCTTCAGTAAAGACGGCCTTCCCAACTGCAGTCCCCTGAGGAAGCCTGTgctTAGACTGGCCCCTCACCTGGAACCCTCCAGCACCATGGTGGCCCTGGAGTGGTTGGATGTGGAGCCACTGATTGGCTATAAGGTCTCTGATTACATCATCCAGCACAAGCGGGTGGAGGACCCCTCAGAGGCAGAGATCTACACAGgTGAGTTGTTAAGTCTGGTGGACGACCTGCTCTCAGGTCTTGGTTCGTCCTGTGTGGTGGCAGGTCGAAGGAACGGAGACCATCCTCACTCTGTGCTCTACTCGCTGGTCTTCAAGTGCCTGGAGCCCGACAGCCTCTACAAgttCACCCTATATGCTGTGGACAGTCGAGGGAGTCGTTCAGAGTCTAGCTTCGTCTCAGTGCGGACGTCTTGTCCAATGGTAGATGATAGCAGAGCAGAAGAGATAGCAGACAAGGTATATAACCTGTACAACGGCTACACCAGTGGCAAGGAGCAGCAGACGGCCTACAACACTCTGATGGAGATTCCCCCTCCGCTGCTTTACAGGGTGCAGCACCACTACAACTCCCACTACGAGAAGTTTGGAGATTTCGTCTGGCGGAGCGAAGATGAGCTGGGACCCAGGAAAGCACATCTGATCCTGCGCAGAGTGGAGAGGATCAGCCGGTACTGCCGGGCCCTGCTCCACAGCGCATACATTCAGAGCCGCACAGACACCATGGCTTACGTGTTCTGTCGCAGCGAGGAGGTTCGGCCCACCAGCAAAGTGTGGCATGGCTCCCTGCATGAGACTCGCACCACCTGCATGGAGAAACTGATCTCAGTACAACGCAGCACATACGGCAACGCCAAGCTCCGATGAGACAAGCTGCCCGACGACACAATGACAGCCGCCTCCTCCTCGTTTCTGGTCTCTCCACTGACTGGTATTTTTCCAAATTAGGAGAGCCCTGAAACCTCAACCCCACTGGACATTGTTAGAACTACTGTCAAACACCCTCAAATGCTTTTTTGGAAAAAGTGCTAAGAACTGCTTGAAGAGGAAAGACGGTTTGGATGTACATGCCAGTGACTACCACTATCAACGAGGAGGAGCAATGTGAGCATGTAAATTATCATTCAACCCAGAGCAAATTGGTTGGCAAAAAAATACTGAATGTAATATTGCAGTTTCTCATGGTACTTCGACTGGAGGCGTACCagggaaacaaacaaacaaaaaaacaactccctgttcatctctcctCTTGGCtggagagatgtgaaagagagcgattagatttgatttgattcatttgTAATACTTAAACATATCACCACTACAATAATGTCGTCTTTTTAATGCAGACAACATAGTGTTTATAATAAAGGCTACAGAGAAATCCTGTGTGACGGATTGTGATGTCATCAGCTGTACCGTACGGTGTGTGAGTTAACGCTTTGCAGCTAGAAAAGTCCTCAACCAGCAGTGtttcattttttgtttgtttgtttattgttgtttATCTCCTCAGATGTTGACAAAGGTGGAGAGCTCCTAAACCACAGGGAAAATCCATATTTAAAAAAAGAGTCCATTAATATGGTCAACTGGTGAATATAGATAAAGAAAAAGAAAACATTTTCATAGGAAAATATTCCAAATGACTTCAAGATTTTATGCTATATGTATGGATTGCAGAGTGATGGCAGGGGAATGGCAATGAATAACGAAACGCTATAAAGGAATCATGTTTAATCGTATGGATCTTGTAGGATCCCTTCCCTCAAGGAAACATTTACTTGACTTTCCATCTCTCAAGAGCCATGGACATAAAAATCCAACTCATTGTTTTTTTGTATTGATTATCATTTCACGTTATATCAATTGTAATAGTAAATTATTATATTGTAAATATGAAATTGTAAATAAcatatgtattattatgtggctttAATTGTCTTTTTTCGAGAGAATGTGAAATATTAAATACTATATATCACAAGCATCTGCATTCTTTTGGACAAGGAGAAAGTAGCTCTGTTTAACCAATTGATTCACATCTGCGGTATAGGCTATACCACACTCCATGGGTTGGAGAGAAATTTAAAGATTATGATGAACTCAACACCTGCATTGTCATATGGAATTATTGAAAAACAACAGCTGCAAATGAATGGGAACTTGTATGTAATGTCCCTCAGGATTACCTGGGAATACTTTCCTACATCATCTACCCCTTCACTCTGCTTACGGTAGGTAAGTAACAACCTGTAGTGATGTTTTTTTTCCACCATCAATAGTGGACCTCGAACAAAATATTTACATTAATTTCCACGGGGGAAATAAGTCCCTGTGGCAATGAGCAGGTATATGGTATGACTAATGCCAGTTAATAACATTACTGAaggtatccctctctctctcgttctctctcgggAAACATTCTCTTTTTCCATCTCCTCTACACAAACTATTCCTTCACTCAGGTCCAGTCTCTTTCCACTCATGCAACATTAACTGTGCTTTAAAACACAGTAGACTAATGTTCATTCTCACAAATTAGGCCATTCACGTCTCTGGGGTGCCAGGAGCAGCGCTCAGGTTTCCATGTCAAGGAATCAATGAGGGCCTTACATTTGGATTCGTACTTCATTACTACTGTTTTGATAGTAGCTTTGACATTTTCATGTCCATAAAATCAAAGTGAGTATAGCCAGGTGAGTAGCACTTCAATGCACTTTCAAGTAAACATCAAGGGGTCGGACAATACAGGGTTTGTAGTATTATCTACAGGGAATTGGCTATGTAAAGTCATCTGTACTATTGGacaaagggctctattcaatccgcatcgcggaagttcagctttacagcgtgattgaaatgtaaaggcaatgctcctGCTTTAGTGGAGACTGCGTTCGCGGTAAAAGCTgaatatgtcggctcaatcagaaatGACCTTTTACATTTCTATCCtggaatctgtaacgcttcagctttACAGATTAAATAGAGCCCAAAGTTATCATGAGCCATGTTAAGCAAAAAAGTCAGGTTATATGTAGAAATGGGGCATTCTATTTTAAAGGACAAAGAATTGACAACACTTCCTTGGCTTACATCCACTTAACCAGTGTTTTATTTCTACATAATACATGACAGGGAAATGGACATGATACTCATCATGAATGAGGATCCATCCTTATGAAAATATAGCACACATCATTAGAGCCCTGCTTACCATGTTCCAGAGCACCGGAAATATAATAGCAACAGTGAAAAAAGCAAAGAATATGAGGAAACATCTGCTGAAACAAAAGTCTGATGTGTTATATGTGCCTGAAAAACGGTGTACTGTGAATGGACCTAACAGAGTGGGTGCTGCAAGCgagggaaggtgagagagagagcgaggggtgcTGATGGGTACCTTTACAGTGTTTTCAGTTCAAACTCTAAGGCAAGGGAGGAAAGAGTAAGCAAACATCTGTGGTGTAGAGGAAGGAGTAAGGATATGTAAGTTGTTTTTTGGTTGGTGCCAGTCAGTCTGAGGGTGAGTTCAACGGGAATGGTGTTCACTGTTAGAATCATTCAAGTCTGATAATAAGAATATGTTGTAACATGTTAAATATTCTATTCAAATGAAtgctttgctcttgttttgtttgttttcacacTCTAAAAAGAAGGAACATTTTGGTAATTTATTTTCAACTGACTGCTCCGAGACCCACAAACTGACCACATGATGCTTTATTCATCTTGACAACAAATAAATTAAGTTTGATTTCA
>TU441780
CTgaatatgtcggctcaatcagaaatGACCTTTTACATTTCTATCCtggaatctgtaacgcttcagctttACAGATTAAATAGAGCCCAAAGTTATCATGAGCCATGTTAAGCAAAAAAGTCAGGTTATATGTAGAAATGGGGCATTCTATTTTAAAGGACAAAGAATTGACA
>TU441779
tccagtatctcctcccatttccactcctccagaaaacgctgcttggtctttttgtggtgggatcttctgtaacgctcgtctgaagaagtggaccaagatgcagcgtggggTGAGTTGTTAAGTCTGGTGGACGACCTGCTCTCAGGTCTTGGTTCGTCCTGTGTGGTGGCAGGTCGAAGGAACGGAGACCATCCTCACTCTGTGCTCTACTCGCTGGTCTTCAAGTGCCTGGAGCCCGACAGCCTCTACAAgttCACCCTATATGCTGTGGACAGTCGAGGGAGTCGTTCAGAGTCTAGCTTCGTCTCAGTGCGGACGTCTTGTCCAATGGTAGATGATAGCAGAGCAGAAGGGTGCAGCACCACTACAACTCCCACTACGAGAAGTTTGGAGATTTCGTCTGGCGGAGCGAAGATGAGCTGGGACCCAGGAAAGCACATCTGATCCTGCGCAGAGTGGAGAGGATCAGCCGGTACTGCCGGGCCCTGCTCCACAGCGCATACATTCAGAGCCGCACAGACACCATGGCTTACGTGTTCTGTCGCAGCGAGGAGGTTCGGCCCACCAGCAAAGTGTGGCATGGCTCCCTGCATGAGACTCGCACCACCTGCATGGAGAAACTGATCTCAGTACAACGCAGCACATACGGCAACGCCAAGCTCCGATGAGACAAGCTGCCCGACGACACAATGACAGCCGCCTCCTCCTCGTTTCTGGTCTCTCCACTGACTGGTATTTTTCCAAATTAGGAGAGCCCTGAAACCTCAACCCCACTGGACATTGTTAGAACTACTGTCAAACACCCTCAAATGCTTTTTTGGAAAAAGTGCTAAGAACTGCTTGAAGAGGAAAGACGGTTTGGATGTACATGCCAGTGACTACCACTATCAACGAGGAGGAGCAATGTGAGCATGTAAATTATCATTCAACCCAGAGCAAATTGGTTGGCAAAAAAATACTGAATGTAATATTGCAGTTTCTCATGGTACTTCGACTGGAGGCGTACCagggaaacaaacaaacaaaaaaacaactccctgttcatctctcctCTTGGCtggagagatgtgaaagagagcgattagatttgatttgattcatttgTAATACTTAAACATATCACCACTACAATAATGTCGTCTTTTTAATGCAGACAACATAGTGTTTATAATAAAGGCTACAGAGAAATCCTGTGTGACGGATTGTGATGTCATCAGCTGTACCGTACGGTGTGTGAGTTAACGCTTTGCAGCTAGAAAAGTCCTCAACCAGCAGTGtttcattttttgtttgtttgtttattgttgtttATCTCCTCAGATGTTGACAAAGGTGGAGAGCTCCTAAACCACAGGGAAAATCCATATTTAAAAAAAGAGTCCATTAATATGGTCAACTGGTGAATATAGATAAAGAAAAAGAAAACATTTTCATAGGAAAATATTCCAAATGACTTCAAGATTTTATGCTATATGTATGGATTGCAGAGTGATGGCAGGGGAATGGCAATGAATAACGAAACGCTATAAAGGAATCATGTTTAATCGTATGGATCTTGTAGGATCCCTTCCCTCAAGGAAACATTTACTTGACTTTCCATCTCTCAAGAGCCATGGACATAAAAATCCAACTCATTGTTTTTTTGTATTGATTATCATTTCACGTTATATCAATTGTAATAGTAAATTATTATATTGTAAATATGAAATTGTAAATAAcatatgtattattatgtggctttAATTGTCTTTTTTCGAGAGAATGTGAAATATTAAATACTATATATCA

Function

NR:

description
PREDICTED: astrotactin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977273.1 False 6945 mRNA 0.49 23 30855542 31286199
TU441780 False 173 lncRNA 0.35 1 30856231 30856403
TU441779 True 1788 lncRNA 0.44 5 30857338 30899011

Neighbor

gene id symbol gene type direction distance location
haus4 LOC106567141 coding downstream 598433 30244530 ~ 30257109 (-)
LOC110523594 LOC106567038 coding downstream 612170 30218103 ~ 30243372 (-)
LOC118964583 NA coding downstream 675924 30177488 ~ 30179618 (-)
LOC110524741 LOC106567126 coding downstream 722005 30109646 ~ 30133537 (-)
surf2 LOC106567032 coding downstream 750854 30102342 ~ 30104688 (-)
LOC110522855 LOC103355419 coding upstream 310859 31597058 ~ 31597647 (-)
LOC110523605 LOC106565751 coding upstream 493066 31779265 ~ 31942907 (-)
LOC110523606 LOC106565750 coding upstream 800038 32086237 ~ 32151031 (-)
LOC110523607 kad coding upstream 873974 32160173 ~ 32171800 (-)
LOC110523609 LOC106565740 coding upstream 897545 32183744 ~ 32234995 (-)
G389053 NA non-coding downstream 346 30854937 ~ 30855196 (-)
G389052 NA non-coding downstream 2609 30852083 ~ 30852933 (-)
G389044 NA non-coding downstream 16057 30839267 ~ 30839485 (-)
G389031 NA non-coding downstream 54382 30800553 ~ 30801160 (-)
G388987 NA non-coding downstream 59588 30732298 ~ 30795954 (-)
G389397 NA non-coding upstream 94231 31380430 ~ 31380744 (-)
G389402 NA non-coding upstream 96742 31382941 ~ 31383348 (-)
G389736 NA non-coding upstream 349347 31635546 ~ 31636071 (-)
G389765 NA non-coding upstream 367038 31653237 ~ 31653472 (-)
G389771 NA non-coding upstream 368888 31655087 ~ 31655304 (-)
G387939 LOC106567059 other downstream 643656 30168119 ~ 30211886 (-)
LOC110523591 LOC102784149 other downstream 1027234 29821413 ~ 29831150 (-)
G387321 LOC100136012 other downstream 1210794 29603183 ~ 29644748 (-)
G387052 LOC106566935 other downstream 1420231 29434605 ~ 29435311 (-)
G387064 NA other downstream 1460726 29393095 ~ 29394816 (-)
G392227 NA other upstream 2065218 33351417 ~ 33352338 (-)
G392245 NA other upstream 2094593 33380792 ~ 33381565 (-)
G392503 LOC106565394 other upstream 2447963 33734162 ~ 33762381 (-)
G392858 NA other upstream 2861264 34147463 ~ 34148628 (-)
G395297 NA other upstream 4566591 35852790 ~ 35853357 (-)

Expression


Co-expression Network