LOC110523605 (LOC106565751)


Basic Information

Item Value
gene id LOC110523605
gene name LOC106565751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 31779265 ~ 31942907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602462.2
CCTCTACAATACAAAACGGTATTCTCAGTACCTCCCCCTGGTTTCGCTTGCTTTTGCACTGCACTCGCTCAGTCTGTGCATCTCTGACTACCTTCATTGACATCCACCCTACCACCTCTCCACCTGCGTACAGCTTTCACGGATCCGAGCTAGCCAGACCCTCGCTAGAACACATCGGGATATTTCTTCCGATCCGTTAAGCTCCCCCATTTCCCCTCAGGTCGATTTGGTCACTGTGTTTCTCCGTGTATCAATGTATACGACCTCGCCGAGCCGAAGGATTTCTCTCTCTTGAGCATGAGAAGGAACACCATCTCATCCGCAATCCAACATCTAAGATTGAGCTACCAGCATGCACACTGGATACATATGCTCCAGCAGAAGTTTTCGGCCAGAAAACTAAAGCACATTGGACCACAGATTCCGAACAAGTGGGTAAATCAGTTTTAGGTCTTCACAGAATGGAGCGAGAATGAACAGAGAGCGGCTGAAAGAAAAGCATGAACTGGAGGTTTATTGAGGTCATCTGCTTCCTGTTTATATGGGACCATATAACAGTTCAGTCTTCCCGCCAGGACCCGTCCGCCGCCGAGCAACATGTTACCAAGCAGTTTGATTGGCTCATCTCCGACCGCGGACCTTTCCACCACTCTCGGAGCTACCTCTCCTTTGTGGAAAGATTCCGCCAAGGATTTACAACCAGATATAAAATTTATAGGGAGTTTGCGCGTTGGAAGGTGAGGAACACAGCCATcgagaggagggacctgatccggAACCCCGTGCCACTTATGCCGGACTTCCAGCGCAGTGTCCGGTTGCTAGGGCGACGACCCTCCACGCAGCAGTTCATTGACACCATCATCAAGAAGTATGGCACCCACATCCTCATATCAGCCACCTTGGGAGGCGAGGAGGCGTTGACCATGTACATGGCCAAGAACAAGCTGGACAGAAAGCTGGTCAACGCCACTCAGAATGTGGAGGCCCTGCACCAGCTGGCATCCTCATACTTCATCGACCGAGATGGCACCATGCGGAAACTCCATGAGATCCAGATCTCCACCAATGCCATCAAGGTGACAGAGACTCGCACGGGCCCGCTGGGATGCAGCAGCTATGATAATCTGGACTCAGTGAGCTCCGTCCTCCTGCAGAGCCCAGAGAGCAAGCTCCATCTGCAAGGTCTCCAGGTCATCTTTCCAGAGTACCTCCAGGAGAAGTTTGTCCAGTCAGCTCTGAGCTACATCATGTGTAACGGGGAGGGGGAGTACGTCTGCCGGAACAGCCAGTGTATCTGCATGTGTTCTGACGAATACCCACAATGCAACTGTCCCATCACCGACATCCAGATCATGGAGAACACCCTGCTGGGACAGGCGGAGTCATGGGCAACCTCCTACAAGGACTTTGAAAACTCAGacGAGTTTAAGTCGTTCCTGAAGAGGCTGCCCTCCACCCACTTCCTGCCGGTCAGCAGTGTCCACCTCCTCTGGGGCAGTGACTGGGACCTGCAGGCCCGCTACCGCCTGCTCCAGAGCTCATTGGAGACCCAGAGGCTCAAGATCCAGCGCACTGCCCGCAAGCTCTTTGGCCTCAGCATCCGCTGCCACCACAACCCCAACCACCAGATGCCTAGGGAGAGGTCTGTGATGCAGTGGCTAAACAGGGTCCAGTCCTTCCTCTACTGCAATGAGAATGGTTTCTGGGGGACCTTCCTGGAGAGCCAGAGGACGTGCGTGTGCCACACGGGTGTCACCCTATGCCAGAGACCCATCCCATGTATCATCGGGGGCAACAACAGCTGTGCCATGTGCAGCCTGGCCAACATCTCGCAGTGCGGCTCCTGCAATAAGGGCTACAAGCTATACAGAGGTCGCTGTGAGCCCCAGAATGTGGACTCTGAGCGCAGTGAGCAGTTCATCAGCTTCGAGACTGACCTGGACTTCCAGGACCTGGAGCTCAAGTACTTGCTCCAGAAGATGGACTCGCGTCTCTACATCCACACCACCTTCATAAGCAACGAGATCCGCCTGGAGACATTCTTCGACCCACGGTGGCGCAAGCGCATGTCCCTGACCCTGAAGAGCAACAAGAACCGGATGGACTACCTCCACATGATCAACGGACTGTCCATGAAGATCTGCCAGATGCGCAACAGCAGCATTGACCCCATGTTCTTTGTTTACGTTAACCCGTTCAGCGGCAGCCACTCGGAGGGTTGGAGCATGCCCTTTGGCGAGCACGGCTACCCGCGCTGGGAGAAAACAAGGCTGGGGAACTCCCAGTGCTTCAACTGGACCCTGCTGCTAGGCAACCGGTGGAAGACGTTCTTTGAGACAGTACACATCTACCTACGAAGCCGAGCCAAGGTGCCCACCGGGCTGCGCAACGATACGGGCCATGGTCCCGTCGACTTGTCCGATCCTAACAAGCGCCAGATCTACATCAAGATCTCTGACATCCAGGTGTTTGGCTACAGCTTGCGCTTCAACGCTGACCTGCTCCGCAGCGCCGTGCAGCAGGTGAACCAGTCGTACACACAGGGGACTCAGTtttactcctcctcctctgtcatgCTCTTGCTACTGGACATTAGGGAGCGGATTAACCGCCTGGCCCCTCCAGTGGCGCCCGGGAAACCCCAGCTGGACCTGTTTTCATGTATGCTGAAGCACAGGCTCAAGCTGAACAACAGCGAGATGATCCGGGTCAACCATGCCTTGGACATGTACAACGCAGAGATACTGAAACAATCAGATCACCTGACTACCAAACTCTGCTGAGAtacagtaaacaaacaaacaaaaagaagATCAAACAGATactaaaaatagaactgtttgggaATATTCCTTTTTATTTACttatctcttttttttctttttggaCCTTTTTGTTCTGCCTTTTGATGTAATATTAACAACTTTGTAAGTGTAATTGTTAAAGAGAAATCCAAAACATTGATGAAGCCTTTTAGTTGGATAAAGAAGAAGATTCATAGAAACCACTTTAAAGACTGTACCATATTTGTCCCAGCATGTCTGTCATTTCCTAAAATAGCATAAAAAGAGAATAAGAAAAAAATGTATCCATCTTCTGGTGACAAAGAGGCCTTTATTTTACTCTAAGGGAACAAAGGTTATATCTGAAACTGCCATTCTTTACTAAGTTAAACCTTTTTAGTCGCATTAGGGCAGACCAGATATCATCCTTTTATTTCAGTGAATATGCTTTATCAACAAACAAAATATTACAAATATGTAAAAGGACAGTTTAATACAGAATGAAGGCATTTATACATTTTAAGGGTTAAATAACCTAGCAAACTGTAAGCTGTAAGCATTAGCTATATATTCTCTTTGAAAAATTGATAATCCATGACAAGTCTGCATACCGTTCTTTGTGTAGTAAGGTATAAGGCAGCAGAAAGTCATTTCATGTCAAATAACGGAAGCCAGctgtttatatactgtatgtgtataccTTTATTTCGCCTGATGCTTATTGATGTTcgttaattgaatgtgtcatttgAGAGCGAGTGAATCCAGGCAAAGCTAAAAACTTGTCTTTAGGCACTACCTCCCATGTTTGAAATTCTACCTGCATTTCCCATGAGGTGGTTTCTTCTGGTGCCTGAGTATATATTGTGGTCTGAAGATGAACAATCAATGCTACTTCGTACAGCTTTGCAAAATGTACACCTTGTGACTGCTGATGTGTCAAGCTTTACGGCACATGGATCATTCACGTACATCTGCAACAGACACCATAAAAGCCATACATTTCCCTGAGTACACATAAGACATGGAAAAGCACcccatacatttttcaaaaacaTGAAAAATGTCCCATTTGTGTTTTTTATGTAGttgttattccccccccccccccccccccccccccaattaatTTAAAATGGAGGACAGCACAGTGGACAAAGAGAGTATATTCTGTGGAATTATGGGATGACATTGTAAAGTAATTGGATTTCTGTTAAATAGAGTGAACCCAGATGAGAAACAGATGGGAAATATAAAAGCTTCAAATACTTCTGTTGATTTTAATCTTTATTTTCTTAATGCCACGTTGGATCTTAACTTTCTAATGACCATGCAAAACAGATTTTAACCCTCAGAAACAAGATTGTTTAATATTTCTAGTCATACTTTATTGAAAGCACCGGCATGAAATATGTTTATAGCTATATATAGCTACAGAATTTAACATAATGTCAAATGTCATACTATCTCAGAAGTATCAAAGAACACTACCTATATTATTATTAAGTGCCTGTTACCTATCCCTTTCAAATACTTAGAGGAGGGAAATTGCTCTTAGTTTAGTTACAGtacaaacattaaaatacaagaTAGACATTCAAAGGAATTTAGCAACTCAGACCATATCAATGCAGATCTGTTGCTCATCTCATCCTGAGATACATGTTTTCTACCTAAAGGCCGGCTGGTTTGTGCATGTGGGAAAATTAACCATCAGTAAGAGATTGAAGTCTCAATTTCCTGACACTGTCTCTCCTATGTACATTATAAATAGAATGTAAATAGAAACGTTGTGTTGTAATAGTTATAACATCAAAGACAACATGAATTATAGTAATTTCAAGAGAACAAAAGAGGCCATTATTACTGAGAATAACCACAATTACTGTTGGTGTACCTTGCACAAATTACAATTACACTCCATTCTCAAGTTATTTACTTCATTATGAATCTCAGAGAGGGATGGTAATTTCTGACTGTTTTGATCAAAGTATATGAAATATACAATATGAAATGAGTTAGTTTTGACCACTGCATACATGAAACAAGCACACATTAGCTCTATCAGCATAACATCACTGCAATGTTCCATGAATACATTTGAAGATACAGCTCCTAATACCTTGCATATGTAATTTTTGCTGTTATGTTGAAATCATTATATCAGCTTATTTCAAATGAATGTTTCATATAATAATCTATTTCTCATTAAAAGGCTATATTTAATACGAA

Function

NR:

description
BMP/retinoic acid-inducible neural-specific protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602462.2 True 5018 mRNA 0.45 8 31779265 31942907

Neighbor

gene id symbol gene type direction distance location
LOC110522855 LOC103355419 coding downstream 181618 31597058 ~ 31597647 (-)
LOC110523598 LOC106565912 coding downstream 493066 30855542 ~ 31286199 (-)
haus4 LOC106567141 coding downstream 1522156 30244530 ~ 30257109 (-)
LOC110523594 LOC106567038 coding downstream 1535893 30218103 ~ 30243372 (-)
LOC118964583 NA coding downstream 1599647 30177488 ~ 30179618 (-)
LOC110523606 LOC106565750 coding upstream 143330 32086237 ~ 32151031 (-)
LOC110523607 kad coding upstream 217266 32160173 ~ 32171800 (-)
LOC110523609 LOC106565740 coding upstream 240837 32183744 ~ 32234995 (-)
fam78ab fam78a coding upstream 558923 32501830 ~ 32525527 (-)
LOC110523620 LOC106565595 coding upstream 681615 32624522 ~ 32645785 (-)
G389891 NA non-coding downstream 41295 31737451 ~ 31737970 (-)
G389798 NA non-coding downstream 104917 31674030 ~ 31674348 (-)
G389772 NA non-coding downstream 123535 31655520 ~ 31655730 (-)
G389771 NA non-coding downstream 123961 31655087 ~ 31655304 (-)
G389765 NA non-coding downstream 125793 31653237 ~ 31653472 (-)
G390253 NA non-coding upstream 71682 32014589 ~ 32014816 (-)
G390453 NA non-coding upstream 94730 32037637 ~ 32037909 (-)
G390459 NA non-coding upstream 103839 32046746 ~ 32047048 (-)
G390475 NA non-coding upstream 135299 32078206 ~ 32078423 (-)
G390537 NA non-coding upstream 234274 32177181 ~ 32177431 (-)
G387939 LOC106567059 other downstream 1567379 30168119 ~ 30211886 (-)
LOC110523591 LOC102784149 other downstream 1950957 29821413 ~ 29831150 (-)
G387321 LOC100136012 other downstream 2134517 29603183 ~ 29644748 (-)
G387052 LOC106566935 other downstream 2343954 29434605 ~ 29435311 (-)
G387064 NA other downstream 2384449 29393095 ~ 29394816 (-)
G392227 NA other upstream 1408510 33351417 ~ 33352338 (-)
G392245 NA other upstream 1437885 33380792 ~ 33381565 (-)
G392503 LOC106565394 other upstream 1791255 33734162 ~ 33762381 (-)
G392858 NA other upstream 2204556 34147463 ~ 34148628 (-)
G395297 NA other upstream 3909883 35852790 ~ 35853357 (-)

Expression


Co-expression Network