LOC110523550 (LOC106566624)


Basic Information

Item Value
gene id LOC110523550
gene name LOC106566624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28536287 ~ 28594968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602342.2
GCCTGAAACCGTACCCGCGCTGGCACAGTGGGGAAGCATGCATGCATGGCCGAGCCGGCGCTGCGCTGACTTGGTTTTCTTCAGGCCGAACTATACGACTTTCCACCGAGCCTGCTTACATTTGCCTCGTTTCATGCGACACATCGAAGTATCTCCGTCCATGCTGAGGTTTTTATAAACTCGTTTTATGCCACGGCACATTTGAATGACTCCGGTCCGAGTAAGGAAAGAGCTGATCCTAGTTATCCAGCCGTGACAATCCAGCGACAACGCCGAAGACACGGACACAGATCCGAGGGAGGACAACGTCAAGGAAGACACGGAACTGTCTGTAGCGCACAGGTTCTTTGGAGTTACTTATTATTCCAAAGTTCTAGAACAATTGAACAGATTTATGCATGGACTACCCTGTTATTACCTTTAATATCAGCAATTATATAGCTGCGTAACCTATAGTTGCAGAAACTATTAGTGCGCAAATAAGAGTTGTTCCGAGGAGATCATTATTCCTCATTGTGTTTAAAAGGCTATTCATGGTAGACCTACTGAAGGATACCTTTTTTAAGGCTCTAAATTCATGTGTATAATATTTGTGGCATTCCACATCTGTGGTTGAAGAGGATGCGCTTGTTGCTATGAATACATTATACGAGCATTGACTGAAATAATATTTATTTCAAACGGACCCTCAACTAATATTTCAGCAATTTTTTTCACCGATTGCAATTATTTTGTATTCCACAAAAAACGGATTGTGCTTTTCTAAAACTGAATGCAAATACTGAACTTTTTCCAAATGTCAATTCAagcttcagcacaataacttccTCGCGAAGTAATCCAATCAGTTCGTTATAACCAGAGAGGAATCAACTGAGATATAAGGCAATTATAATTTAAAAGCCTTCAGATGGGAATATCATTTCATTCTGTCTGTTCATTCGAATAATTTTATCGCGCGAGACGCTGCATCGAGAGGGACTTTGGCGTGGCCAAGTTCGGGAGCTTTGCCGCAGGTGGAAATGATCCTGTTCGTTTCCCTGGTGTTATGGATGTGTGCATATGGCCAAGAGCCGGCGTCCAAGGTGGTGTCCGACCGCTATGCCGTCTACTGGAACCGGACCAACCCCAGGTTCTACCGGGGTGACTACCACATCGACGTGTGTATAAATGACTACCTGGACGTCTTCTGTCCCCACTACCTGGACTATGTCCCTGAAGAGCGGATGGAGCGCTATGTCCTCTACATGGTCAACTACGACGGCTACAGCTCCTGTGACCACACCGCCAAGGGCTTCAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAACGGACCCCTGAAGTTCTCCGAGAAGTTCCAGCTCTTCACCCCCTTCTCTTTGGGCTTCGAGTTCCGCTCCGGCAGAGAGTACTACTACATCTCATCCACCGTTGCTGACAATGGAAGGAGAAGTTGCCTTCGACTGAAGGTGTTCGTCAGACCAGCAAACAATTGTGTGAAAACTGTCAGTGTTCACGATCGGGTCTTTGACGTCAATGAGAGGGTGGACAATTCCCTAGAACCAAGAGATGATACCAGTCACGAATCAGCCGAGCCGTCCCGAGGTGACGTCAACTCGGTGGGCTGGGTTCAGACCACCGGCCTGCTGGTCACCTCCGCCCTGGTTCTCTGTGCAGCCATCTTGTCTTTATAGCGCCCAGCCTGAGGGTTTTAGACAGGGCGGAGTGGACTCGCCCTGACTGGACCATACAACCCCCAAGGTGCACTTTTTAAAAGACAGTCTGAGTGCCGGGGAGAGGTGGACTTCTAAGGGGGAAGACCTTTTTATAAACTTTGCTTTGGGGAGTTAAGATGCCAAAAGCCTTTTTGACTCTCATTTTGTCATTTTACTTTCCTGTAGATGTTAATATTTGAAGGTCATAGTTTCCCAGTGAATTTGCTGtccccatcatctctctctctctctctctctctctctctctctcacgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatcactctcTCCTCTGTGGTCCCACCATACCTTTTGCAAGATGAAACAACAGAACAAGAACTACTAAAAATAACTTTTTTTCAGGCCCCCAAATGACTTTGATTTAGAATATGATGAAGTCTTACAGTGAATAACTATGATAATTTGAAGATGGCTTGTGACTGATCAGATCAGCCAATGGCAATGAAGTAAAGGAGTACTGGCCAATCAAATGAGGCCAAGACATACTGGCCAATCAAATGAGGACAAGGCATGCTGGTCAATCAATGGTGAATCAAGGATCCAGAGCCATGGTTGTTGCTTGGAGAAGTCCTGTTGCCAAGGGGAGGGGGCTCTCTTTTCTTGCCTTTGAAGAGTCCATTAGAAGTTCATGAGATGGGGGTTGGATTTGATGATTCAGAGACTGGGAGTGAACGATCTTAGCTGAACCGGAAAAAAAGAAGCACTCATGTTTAGAAATTTGTGTCCTTTTAGGGGAATTAGTGATCAAttcatgtattttttaaatgaatcACGTAATTCAAATTTAGCAAGCAACACGGGTGTATATTTGCGAGGAGCCTGGGAGTTGATATGGTATTTTGTCAGGCAAATGTATTTTCCTATTTATTGTTGAGTCCTTGTGCTCTTTCCCTTTTCTGATTGTTCTGGTTCAGTCACTGTAACTAGTGCAGAGACAAGCCCAAAACATCCCACCACTTAAAAGCACCAGTCTCTCTTTTCATTTTGGAAAGGTGTAGTTATATTTCATACACATGTAATATCTGGGCTTGGACTCAAAATGGAATTGGATTGTTTTTATCTAACAGAGTTCAGGGAAGAGGACATAGTTGGATGTTGTATCAGGGTGTAAGAATGTGTGTTATAACTGTGTTTCTTCCCTGTAACAGTAAACACAAACTGTATGTGTCCTAACAAGTCAGCCCATATTACCATCCACTACTTCTTTTCAACATTGTCATAACCTCTACAAAACTAcaattatgtactgtacataaacAAAAGGTTCAGGGATGACTCTATAACTAGTACGATTAGTTTCAATTATGTTCTTAGTAATATTCTTGAGTTTTTCCCCAAGCAAACAACAAAAACCTTCATTGATATTGATAGGTTAGCGACCATTCAGTGATGATCAACCCACACGTCCCAACACCTCCAACCTTTCTCCAAAAGTTGAAGGTAGGTTGTGGCAACGTTAGTTTCATCTGTAGCAGCTGCAGCTCTAGTGTGATTTAGCCGTGTCTTTGATGTCGTGAGGAGCGGTGTCCAAGCAGACCACATGCTGGGGGGCCATGCGCTAGTTATTTCTGGAATGAGAAAAATCGACCACcaggagggagaacgagagatgagagagagtgaggaagagaggtgTCCTATTCAGCCTCTGGATAGGCTCactagcagggagagagaggtgtcctGTTCAGCCCAGAGGTAATTTTTACCACCAGAGGACTGGAATGagtaatgaggagagagagaaggccagCTGAGATCAATAGTGATGGGCTTCTCAAACACAGGAACACGGTAAATATTTCCCTCCACTGTCTGATACACAGTCTATTTAGTGTACTGAGACCAACTCACATCCTTTGTAAAGGGGATGGACTATCACTGAGAAATACATTAGCCTCTGCCTCTGTTGGCTGCAAGTGTGGGATTCAGTTTGAACAAGACTTTAAATAAGAAAAGCTGAAATTCATTGTGACTGACATCATTCACTTCAGCCAGTCAATGTTGGGAAACAAGGATCAGCTTGTCTCATGGATACTGTGTATCCAGCTGTAGTGTTAGAGCAGTGGATCTCACACCTCTTTGAAGGACAACCGCAGTTAACAAAGACACATTGTTAATGCTGTTAGTGAGGGAATAAAGTCAATGTTGGATAACAAAAACTGTTGATTACATTTGTTTAATATCTTTTGTGTAAGGTTTTCACATATCaatgttatagtgtgtgtgtggaggttgaAGTGCCCAAGTTAAGGGCTCTACTATTGGAAGTGCACTATATCCATCCATGCTCATCCAAGAACCATACTGCACTCCCATCGCCCTcctcttttgaccagagcttagTAGTATTTGCATCTGAAATGTGGTTTAGGCGCCTAATGTTTTGAGTCCCTGTACATGCTTAGTTTGTCTGTGGTCCCTCTTAATCTTCACTACAATGGTTTCAGAGGAAGCTTCAGTAGTCAGCAGCACCATGTTGTTATCTGAATTCAGGAGATTTTGTAAAGCTTGTTAAGTGTTGGTTTTCTGTCCATATCACAATGTCATGAATCAGTTAACTTGTGTAATTTTCCATTCAAAAGTTGATGTACAGTATGAGATGCAGTTGTGTTACAGGGTGAATTGAGTCTTTTAGGAGGAGCTCTTCACCTGGCACCTGTTACTGTAGCCATGTAGCCTGAACCTGACACCACTGTGCCCTCCTAtgtcctctgtccctgtcctctgtcGCTGTCCTCTGACCCTGTTGTCTGTCCctgttctctgtccctgtcctctgtccctgtccccagtGACGGTCTGTTATCCCAGCCCTATTGTCCTCACCTCCCCAGACTGTTgtaactcctccctctctcccggtcCAACTCTCTTCACCAGAATGTTCTGCAAATGTACTGTATTTCATACGAAGGCCATTATTTGTAAATACACAAATGTGTTGGAGCAGCTATGACTAACTACAAAAAAAGATTTAATAAAAGTTATTTGTCATTGTTGTAA
>XM_021602341.2
AGCCTGAAACCGTACCCGCGCTGGCACAGTGGGGAAGCATGCATGCATGGCCGAGCCGGCGCTGCGCTGACTTGGTTTTCTTCAGGCCGAACTATACGACTTTCCACCGAGCCTGCTTACATTTGCCTCGTTTCATGCGACACATCGAAGTATCTCCGTCCATGCTGAGGTTTTTATAAACTCGTTTTATGCCACGGCACATTTGAATGACTCCGGTCCGAGTAAGGAAAGAGCTGATCCTAGTTATCCAGCCGTGACAATCCAGCGACAACGCCGAAGACACGGACACAGATCCGAGGGAGGACAACGTCAAGGAAGACACGGAACTGTCTGTAGCGCACAGGTTCTTTGGAGTTACTTATTATTCCAAAGTTCTAGAACAATTGAACAGATTTATGCATGGACTACCCTGTTATTACCTTTAATATCAGCAATTATATAGCTGCGTAACCTATAGTTGCAGAAACTATTAGTGCGCAAATAAGAGTTGTTCCGAGGAGATCATTATTCCTCATTGTGTTTAAAAGGCTATTCATGGTAGACCTACTGAAGGATACCTTTTTTAAGGCTCTAAATTCATGTGTATAATATTTGTGGCATTCCACATCTGTGGTTGAAGAGGATGCGCTTGTTGCTATGAATACATTATACGAGCATTGACTGAAATAATATTTATTTCAAACGGACCCTCAACTAATATTTCAGCAATTTTTTTCACCGATTGCAATTATTTTGTATTCCACAAAAAACGGATTGTGCTTTTCTAAAACTGAATGCAAATACTGAACTTTTTCCAAATGTCAATTCAagcttcagcacaataacttccTCGCGAAGTAATCCAATCAGTTCGTTATAACCAGAGAGGAATCAACTGAGATATAAGGCAATTATAATTTAAAAGCCTTCAGATGGGAATATCATTTCATTCTGTCTGTTCATTCGAATAATTTTATCGCGCGAGACGCTGCATCGAGAGGGACTTTGGCGTGGCCAAGTTCGGGAGCTTTGCCGCAGGTGGAAATGATCCTGTTCGTTTCCCTGGTGTTATGGATGTGTGCATATGGCCAAGAGCCGGCGTCCAAGGTGGTGTCCGACCGCTATGCCGTCTACTGGAACCGGACCAACCCCAGGTTCTACCGGGGTGACTACCACATCGACGTGTGTATAAATGACTACCTGGACGTCTTCTGTCCCCACTACCTGGACTATGTCCCTGAAGAGCGGATGGAGCGCTATGTCCTCTACATGGTCAACTACGACGGCTACAGCTCCTGTGACCACACCGCCAAGGGCTTCAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAACGGACCCCTGAAGTTCTCCGAGAAGTTCCAGCTCTTCACCCCCTTCTCTTTGGGCTTCGAGTTCCGCTCCGGCAGAGAGTACTACTACATCTCATCCACCGTTGCTGACAATGGAAGGAGAAGTTGCCTTCGACTGAAGGTGTTCGTCAGACCAGCAACAGACAATTGTGTGAAAACTGTCAGTGTTCACGATCGGGTCTTTGACGTCAATGAGAGGGTGGACAATTCCCTAGAACCAAGAGATGATACCAGTCACGAATCAGCCGAGCCGTCCCGAGGTGACGTCAACTCGGTGGGCTGGGTTCAGACCACCGGCCTGCTGGTCACCTCCGCCCTGGTTCTCTGTGCAGCCATCTTGTCTTTATAGCGCCCAGCCTGAGGGTTTTAGACAGGGCGGAGTGGACTCGCCCTGACTGGACCATACAACCCCCAAGGTGCACTTTTTAAAAGACAGTCTGAGTGCCGGGGAGAGGTGGACTTCTAAGGGGGAAGACCTTTTTATAAACTTTGCTTTGGGGAGTTAAGATGCCAAAAGCCTTTTTGACTCTCATTTTGTCATTTTACTTTCCTGTAGATGTTAATATTTGAAGGTCATAGTTTCCCAGTGAATTTGCTGtccccatcatctctctctctctctctctctctctctctctctcacgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatcactctcTCCTCTGTGGTCCCACCATACCTTTTGCAAGATGAAACAACAGAACAAGAACTACTAAAAATAACTTTTTTTCAGGCCCCCAAATGACTTTGATTTAGAATATGATGAAGTCTTACAGTGAATAACTATGATAATTTGAAGATGGCTTGTGACTGATCAGATCAGCCAATGGCAATGAAGTAAAGGAGTACTGGCCAATCAAATGAGGCCAAGACATACTGGCCAATCAAATGAGGACAAGGCATGCTGGTCAATCAATGGTGAATCAAGGATCCAGAGCCATGGTTGTTGCTTGGAGAAGTCCTGTTGCCAAGGGGAGGGGGCTCTCTTTTCTTGCCTTTGAAGAGTCCATTAGAAGTTCATGAGATGGGGGTTGGATTTGATGATTCAGAGACTGGGAGTGAACGATCTTAGCTGAACCGGAAAAAAAGAAGCACTCATGTTTAGAAATTTGTGTCCTTTTAGGGGAATTAGTGATCAAttcatgtattttttaaatgaatcACGTAATTCAAATTTAGCAAGCAACACGGGTGTATATTTGCGAGGAGCCTGGGAGTTGATATGGTATTTTGTCAGGCAAATGTATTTTCCTATTTATTGTTGAGTCCTTGTGCTCTTTCCCTTTTCTGATTGTTCTGGTTCAGTCACTGTAACTAGTGCAGAGACAAGCCCAAAACATCCCACCACTTAAAAGCACCAGTCTCTCTTTTCATTTTGGAAAGGTGTAGTTATATTTCATACACATGTAATATCTGGGCTTGGACTCAAAATGGAATTGGATTGTTTTTATCTAACAGAGTTCAGGGAAGAGGACATAGTTGGATGTTGTATCAGGGTGTAAGAATGTGTGTTATAACTGTGTTTCTTCCCTGTAACAGTAAACACAAACTGTATGTGTCCTAACAAGTCAGCCCATATTACCATCCACTACTTCTTTTCAACATTGTCATAACCTCTACAAAACTAcaattatgtactgtacataaacAAAAGGTTCAGGGATGACTCTATAACTAGTACGATTAGTTTCAATTATGTTCTTAGTAATATTCTTGAGTTTTTCCCCAAGCAAACAACAAAAACCTTCATTGATATTGATAGGTTAGCGACCATTCAGTGATGATCAACCCACACGTCCCAACACCTCCAACCTTTCTCCAAAAGTTGAAGGTAGGTTGTGGCAACGTTAGTTTCATCTGTAGCAGCTGCAGCTCTAGTGTGATTTAGCCGTGTCTTTGATGTCGTGAGGAGCGGTGTCCAAGCAGACCACATGCTGGGGGGCCATGCGCTAGTTATTTCTGGAATGAGAAAAATCGACCACcaggagggagaacgagagatgagagagagtgaggaagagaggtgTCCTATTCAGCCTCTGGATAGGCTCactagcagggagagagaggtgtcctGTTCAGCCCAGAGGTAATTTTTACCACCAGAGGACTGGAATGagtaatgaggagagagagaaggccagCTGAGATCAATAGTGATGGGCTTCTCAAACACAGGAACACGGTAAATATTTCCCTCCACTGTCTGATACACAGTCTATTTAGTGTACTGAGACCAACTCACATCCTTTGTAAAGGGGATGGACTATCACTGAGAAATACATTAGCCTCTGCCTCTGTTGGCTGCAAGTGTGGGATTCAGTTTGAACAAGACTTTAAATAAGAAAAGCTGAAATTCATTGTGACTGACATCATTCACTTCAGCCAGTCAATGTTGGGAAACAAGGATCAGCTTGTCTCATGGATACTGTGTATCCAGCTGTAGTGTTAGAGCAGTGGATCTCACACCTCTTTGAAGGACAACCGCAGTTAACAAAGACACATTGTTAATGCTGTTAGTGAGGGAATAAAGTCAATGTTGGATAACAAAAACTGTTGATTACATTTGTTTAATATCTTTTGTGTAAGGTTTTCACATATCaatgttatagtgtgtgtgtggaggttgaAGTGCCCAAGTTAAGGGCTCTACTATTGGAAGTGCACTATATCCATCCATGCTCATCCAAGAACCATACTGCACTCCCATCGCCCTcctcttttgaccagagcttagTAGTATTTGCATCTGAAATGTGGTTTAGGCGCCTAATGTTTTGAGTCCCTGTACATGCTTAGTTTGTCTGTGGTCCCTCTTAATCTTCACTACAATGGTTTCAGAGGAAGCTTCAGTAGTCAGCAGCACCATGTTGTTATCTGAATTCAGGAGATTTTGTAAAGCTTGTTAAGTGTTGGTTTTCTGTCCATATCACAATGTCATGAATCAGTTAACTTGTGTAATTTTCCATTCAAAAGTTGATGTACAGTATGAGATGCAGTTGTGTTACAGGGTGAATTGAGTCTTTTAGGAGGAGCTCTTCACCTGGCACCTGTTACTGTAGCCATGTAGCCTGAACCTGACACCACTGTGCCCTCCTAtgtcctctgtccctgtcctctgtcGCTGTCCTCTGACCCTGTTGTCTGTCCctgttctctgtccctgtcctctgtccctgtccccagtGACGGTCTGTTATCCCAGCCCTATTGTCCTCACCTCCCCAGACTGTTgtaactcctccctctctcccggtcCAACTCTCTTCACCAGAATGTTCTGCAAATGTACTGTATTTCATACGAAGGCCATTATTTGTAAATACACAAATGTGTTGGAGCAGCTATGACTAACTACAAAAAAAGATTTAATAAAAGTTATTTGTCATTGTTGTAA

Function

NR:

description
ephrin-A5-like isoform X1

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602342.2 False 4822 mRNA 0.44 5 28536287 28594967
XM_021602341.2 True 4826 mRNA 0.44 5 28536287 28594968

Neighbor

gene id symbol gene type direction distance location
gadd45gb.1 LOC106566617 coding downstream 57923 28476730 ~ 28478364 (-)
c7b c7-1 coding downstream 100930 28431046 ~ 28435357 (-)
LOC110523544 LOC106567207 coding downstream 130137 28404505 ~ 28406150 (-)
ndr1 ndr1 coding downstream 173384 28360479 ~ 28362903 (-)
LOC110523536 LOC106566140 coding downstream 338478 28141409 ~ 28197809 (-)
LOC110523552 habp4 coding upstream 64729 28659697 ~ 28665724 (-)
zo6 zo6 coding upstream 78011 28672979 ~ 28677678 (-)
apba1b LOC106566682 coding upstream 185494 28780462 ~ 28792050 (-)
LOC110523560 mch1 coding upstream 320455 28915423 ~ 28916044 (-)
LOC110523562 LOC106566722 coding upstream 340601 28935569 ~ 28993616 (-)
G386228 NA non-coding downstream 34165 28501856 ~ 28502122 (-)
G386225 NA non-coding downstream 39556 28496525 ~ 28496731 (-)
G386222 NA non-coding downstream 44915 28490966 ~ 28491372 (-)
G386209 NA non-coding downstream 68024 28467942 ~ 28468263 (-)
G386175 NA non-coding downstream 118703 28416463 ~ 28417584 (-)
G386332 NA non-coding upstream 61325 28656293 ~ 28656515 (-)
G386335 NA non-coding upstream 72347 28667315 ~ 28668775 (-)
G386338 NA non-coding upstream 74653 28669621 ~ 28669999 (-)
G386374 NA non-coding upstream 138626 28733594 ~ 28733843 (-)
G386389 NA non-coding upstream 161403 28756371 ~ 28770569 (-)
G386126 NA other downstream 181542 28351775 ~ 28354745 (-)
G385769 NA other downstream 321468 28214543 ~ 28214819 (-)
G385617 NA other downstream 526210 28009267 ~ 28010077 (-)
G383422 NA other downstream 2537507 25996806 ~ 25998780 (-)
anapc2 LOC106566731 other upstream 408715 28994099 ~ 29004755 (-)
G386725 NA other upstream 414270 29009238 ~ 29045158 (-)
G387064 NA other upstream 798127 29393095 ~ 29394816 (-)
G387052 LOC106566935 other upstream 839637 29434605 ~ 29435311 (-)
G387321 LOC100136012 other upstream 1008215 29603183 ~ 29644748 (-)

Expression


Co-expression Network