RNA id: XM_021602361.2


Basic Information

Item Value
RNA id XM_021602361.2
length 3963
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110523562
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28935569 ~ 28993616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAATGTTTCTGTGATTTAAGTTCCAGTCATTTGGATGGATGTTATCACACTCGGAGGGGCGAGTTAAGGAACATCAGTCCAAGAAATGCGCTGAAGTGAACAACGCACAGAATCACTGCTGGATAACCATTAGAGCAACGTTAAAGATGATAAATGACACATGGATTACCTAAACATTTCTTCTATTGCCTGAAGTTGCATTTTTAAATAGAGAGCCATATGGTTAGGTTTCAGGACAGTAAGGCGTCTTACTACTCCAGGTGAACACACGAGGTCCGTTTTCTTGGATTTATTTTATACTTCAAATTAAAGCAATGGGATATAAAACGGATCTCGGATACTGTTTATTTGTGGTATTCACATACTCTCTCATATCCAGGTGTCGAACGAATATGGGAAATAATATCACAGTTGCGGTGATGCTTCCCGACAATTACCACAAGTATCCCTGGGCTTTGCCTCGGGTTTTCCCAGCAATTATTATGGCGAACGAGAATCTACAGAAGAAGCACGGAGTTCTCCAAGGCCACTCAATTCAACTCTTGAATTTCAGCACGGAGGATTCAACCGGTGTCTGCGCAGAAAATAAGGCACAGATTATCGCCGTGGACACCAAACTTTATAATAAACCAGATGCTTTCTTCGGACCAGGTTGCGTGTATTCAGTGGCCTCAGTTGGAAGATTTGCATCTCATTGGAAACTCCCATTGATAACTGCGGGAGGAACAGCATATGGGTTTGTTAACGGGGATGAGTACAAAACGATTGTGCGCACCGGACCCTCGACCACAAAATTGGGAGACTTTGCTAGTATTATTCACGCGCAGTTTAATTGGACCACTCGTGCCATTCTGATTTTTCACGATGTGAAAAAAGATGACCGACCTCACTACTTCCTCTCTGAAGGAATTTACATAATTTTGAAAGCGGAAAATGTCACAGTTGATGCCTTGCCATATCAAGACTCGCCAAGCTATTATAAAGAAATCATTACTTTCATGAAAGACCACGGAAGAATTGTGTATATCTGCGGGCCTCCGGACACGTTTCTGAAAATCATGAAGCTTTTCCAGAGTGAGATCCCAGACCCTGAGAACTATGCCATCTTCTATCTGGACGTGTTTGCTGAAAGCCTAACGGAGCGCAAACCCTGGCTGAACAACGACAGCCTCTGGATTGATCCCATCAAGGTCTTCAAGtctgtgttggtaataaCATACAGGGAGCCTGATAATCCAGAATACAAACAGTTCCAAGATGAGCTCCACATTAGAGCTCAGAAGGACTTTGATGTGAACATAGAACCCTCTCTGATGGATTTCATCGCTGGCTGCTTCTATGATGGCTTTGTGATGTATGCTAAGGCCTTGGAGGACACGCTAGCTGAGGGGGGCTCCCAGAACGATGGAATCAGCATCACACAGAGGATGCAAAACCTGCGATTCTGGGGGGTTACAGGACTTGTGACCACAGACAAAAACAATGCCAGGAACACTGATTTTAACCTCTGGGCAATGACAAACCAGGAATCGGGAGAGTATGGGCTTGTGGCCCATTACAATGGAACTAACAAAGAGATCATCTGGTCCTCAACGGAAAGGATTCATTGGCCCAAAGGAAGCCCACCTCTGGATAACCCACCCTGCGTCTTCTCTTCTGATGACCCCACCTGTGCTGATGGTCATCTTCCAGTGCTGGGGATTGTAGCTGTCGGGTCTGGCTTAGCCCTCATCATTTTTGGAATCTCCAGCTTCCTCATTTATAGGAAACTGAAGCTGGAAAAGGAGTTGGCTGGAATGCTGTGGAGGATAAAGTGGGAGGACCTGCAGTTTGAGAGCCCCAACAAATATCCTAAAAAAGCAGGCAGCCGTCTCACCCTCTCACAGGATACTTGTTACTCCTTCCAGAGAGGCTCCAGCTGCGGCTCCTTGATAACTGCCCATGGAAAATATCAGCTATTTGCTAAAACAGGCTATTTTAAGGGCAACCTGGTGGCCATCAAACATATGAACAAGAAGAGGATAGAGCTGACCAGACAAGTGCTGTTTGAACTCAAACATATGCGAGATGTGCAATTCAACCATTTAACCAGATTCATTGGTGCCTGCATTGACCCTCCCAACATCTGCATCGTGACTGAATATTGTCCCAGAGGCAGTCTTCAGGACATTTTGGAGAATGAGAGCATCAATCTGGACTGGATGTTCCGCTATTCACTCATCAACGACATAGTCAAGGGAATGAACTATCTGCACAACAGCTACATCGGCTCCCATGGAAATCTGAAGTCATCTAATTGTGTGGTGGACAGTCGATTTGTGTTGAAAATTACAGATTACGGACTGGCCAGTTTCCATTCATCATGTGAAAATGACGACTCGCACGCACTTTATGCAAAGAAGCTGTGGACGGCCCCTGAGTTGTTGATTTACGACAGACACCCTCCACAGGGCACCCAGAAAGGAGATGTGTACAGCTTTGGCATCATACTCCAGGAGATAGCCCTGAGGAATGGACCCTTCTATGTGGAGGGCATGGATCTGAGCCCCAAAGAGATAGTGCAGAAGGTGCGTAACGACCAGAGTCCTTACTTTCGGCCCACCACAGACAACAGCTGCCACTGTGAGAAGCTGACCATCCTGATGGAAAGCTGCTGGGCCGAGGACCCAGTCGAGCGGCCAGACTTCAGCCACATCAAGATCTACATCACCAAACTGAACAAGGAGGGAAGTACCAGTATTCTGAACAACTTGCTGTCCAGGATGGAGCAGTACGCCAACAACCTGGAGAACCTGGTAGAGGAACGAACGCAAGCCTACCTGGAGGAGAAAAGAAAAGCCGAAAATCTACTTTACCAGATCTTGCCACACTCAGTAGCAGAGCAGCTAAAGCGAGGGGAGACGGTCCAAGCGGAGGCGTTTGACAGTGTGACAATCTACTTCAGTGATATTGTGGGTTTCACGTCAATGTCAGCTGAGAGTACACCACTGCAGGTTGTGACAGTGCTGAATGATCTCTACACTTGCTTTGATGCTATCATTGATAATTTTGATGTGTACAAGGTGGAGACCATTGGTGATGCGTACATGGTGGTGTCAGGGCTTCCAGTCAGGAATGGTAACCTACACGCAAGGGAGATAGCTGGGATGTCTTTAGCCTTACTAGAACAAGTGAAAACATTCAAGATTCGTCACAGACCCCAAGACCAACTACGGCTAAGGATAGGAATCCACACAGGGCCTGTCTGTGCTGGGGTGGTGGGTCTGAAAATGCCCAGATATTGTTTATTTGGAGATACTGTCAACACAGCGTCTCGGATGGAGTCGAATGGAGAGGCCTTGAGGATCCACCTCTCCTCAGCAACCAAAGAAGTGCTGGATGAGTTTGGCTATTTTGAACTCCAAGAAAGAGGGGAGGTAGAAATGAAGGGCAAAGGCAAAATGCGAACCTATTGGCTTGAAGGGGAGAAGACTGATGTGTACGTTATCTGAGAGGCCTGCTGACAGCGTGTACCCACAGTGGAGCCAACCACAGAGGCTACACAGTGGCACAGTCAGCCAATGCTTTATTTGTTCTAGAATAAGGCCTAAAGGTGATTCCTTCCCCAAAAGCGGAACAACAATATTTACTGAATTAGACCTTTTTGGAAAGGAAGGGATGTTTAATGGTATGTTTATAATACCTGTGTACGGTTACTGCCCCAACAATTGTAAGATGTTTTGTATGGAGAATCTTTCTGTCCTGAGATTGAGTACTTTCTATATTTAGATTTATATCATGTGTTTGGAAGTCAATTCTGTATTAATATTTCCATACAGCGTTCATAACGGACGGGCGCACAGTGTAATAGATGTCAATGCAGAGGTCCGAGTTCCACAGTGGTGTTATAGAGTACAAGATGATATATGTATTTCCAAGATATTGTAAGATATTTTGTGCAATAAACTGAGTACAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438852 lncRNA downstream 157433 28773618 ~ 28778136 (-) True G386403
TU438835 lncRNA downstream 165000 28756371 ~ 28770569 (-) True G386389
TU438819 lncRNA downstream 201726 28733594 ~ 28733843 (-) True G386374
TU438778 lncRNA downstream 265570 28669621 ~ 28669999 (-) True G386338
TU438775 lncRNA downstream 266794 28667315 ~ 28668775 (-) True G386335
TU439213 lncRNA upstream 12961 29006577 ~ 29009082 (-) True G386729
TU439208 lncRNA upstream 15622 29009238 ~ 29036899 (-) False G386725
TU439207 lncRNA upstream 48716 29042332 ~ 29045158 (-) True G386725
TU439240 lncRNA upstream 76957 29070573 ~ 29149445 (-) False traf2b
TU439243 lncRNA upstream 97137 29090753 ~ 29092857 (-) True traf2b
XM_021602359.2 mRNA downstream 19525 28915423 ~ 28916044 (-) True LOC110523560
XM_021602351.2 mRNA downstream 143519 28780462 ~ 28792050 (-) False apba1b
XM_021602352.2 mRNA downstream 143519 28780462 ~ 28792050 (-) False apba1b
XM_036977211.1 mRNA downstream 143519 28780462 ~ 28792050 (-) False apba1b
XM_036977212.1 mRNA downstream 143519 28781585 ~ 28792050 (-) True apba1b
XM_021602363.2 mRNA upstream 483 28994099 ~ 29004636 (-) False anapc2
XM_021602366.2 mRNA upstream 18403 29012019 ~ 29041380 (-) True tprn
XM_021602369.2 mRNA upstream 48709 29042325 ~ 29045213 (-) False LOC110523567
XR_005051708.1 mRNA upstream 49609 29043225 ~ 29045213 (-) True LOC110523567
XR_002473465.2 mRNA upstream 62327 29055943 ~ 29059785 (-) True LOC110523568
TU438654 other downstream 444197 28490966 ~ 28491372 (-) False G386222
TU438555 other downstream 580824 28351775 ~ 28354745 (-) True G386126
TU438176 other downstream 720750 28214543 ~ 28214819 (-) True G385769
TU437993 other downstream 925492 28009267 ~ 28010077 (-) True G385617
TU435637 other downstream 2936789 25996806 ~ 25998780 (-) True G383422
TU439211 other upstream 10067 29003683 ~ 29004755 (-) True anapc2
TU439206 other upstream 15622 29009238 ~ 29045158 (-) False G386725
TU439581 other upstream 399479 29393095 ~ 29394816 (-) True G387064
TU439568 other upstream 440989 29434605 ~ 29435311 (-) True G387052
TU439860 other upstream 609567 29603183 ~ 29644748 (-) True G387321

Expression Profile