G384440 (noc4l)


Basic Information

Item Value
gene id G384440
gene name noc4l
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26877493 ~ 26879509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU436733
CCTTAATCTGGTATGATTCATGGCTGATGTGCTCCAGCAGCAGCTCCAAACAACCGTTGTATCGGTGACGCATGAACATGCAGTACTTCTCATCCGCACTGCGATCACCACCAATCAGCAACTCTTCTTTGGGCAGTTGCCCAACATACAGCTCTCCCCTCTCCAACAACGTGCTGAACAGTTTAGTACATCCATCAATCGCACAAACAAcgttcttctctttctctgaCTGAAGATACTCAAGAACGTCGAACACATCGTTGGCATGTTTCTTGCTCTGAATAATCAGATCTACTTTACCGTTGATGTCTATTTTAGGTGTTTTCACATCATTTACGGTTAAGTTTTCCGAACTCACGTTGCACCTCCTCGAAGCCGCCATTTTTCCCCCAGATGAGGGTAGTGTTGACTTCCTTTACGTTCTAATTTCGCCCCCTTGCG

Function

symbol description
noc4l Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human NOC4L (nucleolar complex associated 4 homolog).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436733 True 441 lncRNA 0.46 3 26877493 26879509

Neighbor

gene id symbol gene type direction distance location
LOC110523517 LOC106566303 coding downstream 22314 26810766 ~ 26855179 (-)
LOC110523515 LOC106566295 coding downstream 73380 26669887 ~ 26804113 (-)
LOC110523516 LOC106563144 coding downstream 207679 26629389 ~ 26669814 (-)
LOC110523514 LOC106566259 coding downstream 253393 26593074 ~ 26624100 (-)
snrpd3l smd3 coding downstream 302447 26572932 ~ 26575046 (-)
LOC110523523 ub2g1 coding upstream 15733 26895242 ~ 26898873 (-)
ulk1b NA coding upstream 22268 26901777 ~ 26937060 (-)
mmp17a mmp17 coding upstream 83492 26963001 ~ 27064380 (-)
LOC110522882 sfswap coding upstream 261001 27140510 ~ 27281507 (-)
LOC110522892 LOC106563163 coding upstream 885346 27764855 ~ 27944738 (-)
G384357 NA non-coding downstream 138708 26736798 ~ 26738785 (-)
G384328 NA non-coding downstream 189112 26681696 ~ 26688381 (-)
G384313 NA non-coding downstream 239008 26637869 ~ 26638485 (-)
G384310 NA non-coding downstream 242416 26634609 ~ 26635077 (-)
G384441 noc4l non-coding upstream 917 26880426 ~ 26881312 (-)
G384443 vps29 non-coding upstream 6980 26886489 ~ 26887091 (-)
G384464 NA non-coding upstream 61883 26941392 ~ 26941877 (-)
G384473 NA non-coding upstream 71277 26950786 ~ 26951277 (-)
G384477 NA non-coding upstream 75496 26955005 ~ 26955236 (-)
G383422 NA other downstream 878713 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 1435699 25437411 ~ 25441794 (-)
G380648 NA other downstream 3115686 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 3165602 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 3320950 23488916 ~ 23556681 (-)
G385617 NA other upstream 1129758 28009267 ~ 28010077 (-)
G385769 NA other upstream 1335034 28214543 ~ 28214819 (-)
G386126 NA other upstream 1472266 28351775 ~ 28354745 (-)
G386222 NA other upstream 1611457 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 2124174 28994099 ~ 29004755 (-)

Expression


Co-expression Network