XLOC_022876


Basic Information

Item Value
gene id XLOC_022876
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17332166 ~ 17334612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046960
tttttctgGACTTCATCTTAGTCAAGCAAAGACCTTGccatctatggaggatgaggaagcATTTAGACTTCCGCTAAAATTTCTTAATTTGTGAAGATGAATTAAAGTGTCTTGAATTTGAAACGAAATCAGGTTGTCTCAGTACTCACAAGGGACAGGAAGGATACAGAAAGAGAATCTTCCAAGACCACAGAGATTCAGAAAACATCTCAGAGTTCGTGTCAGGGACTCAGAAGAGATTGGACAGGAACAAATGCTTTCTTCAAGTAAGCAGAGCTATTGTGCACCTGCTGAATGGAAGAGCATTATGTCCTCGAAATCATCGACGCAGCCTGACCCAAGAAGTATGGCAGACAAGCATAATAATGCCCTCAACACCCAAGTCATCAATGAAATAAAAAGGTGCACTATTATAAGCTGCCCTCAAGTGAACATGGGTCATGTAGGTCATGGAAAGGAAGCTGGACAGTCTTACATGTGTAGTTCATTACCTATTGAGGGTATGGACGATTCAATAGGTCAGCACACAATTATTCCAGGGTACATTGATCAATGTATGTGAAACAAAAGTTGTTCAGTTTGTACTTGAGatcttattattgtcttgttATTGGGAGACAAAAGTGTCATGGCTCTACTATTAGAAAGAGCATAATGGCCAACTTGGTCgattaccatttttttaaaacttgcCTTTATGTCATCAAATTTATGTCAGAATTGTGTACAGTCAGTCACTGTTAGAAGTGCTGCAACCTGCATTTGTACCCTTCACAATTTTAGGTGTGTGTGACTTCTCTTACACTGCATTAAGCTGTAAAGTAGACCAAACATTTTAATTCTGCCACCATTTacacaccctttacttgttccaaatcagtttgagtttctttctttctttctttaaatacaaaagaagatattttaaagaagagAAAGAACGTAAACTGAAATTCTGTAGCatcgacttccacagtatttgtttttcctaatttCAAGTTTACAGCAGgtcttcagctttcttcaaaacaccttattttgtgttcaacagaaaaaagacacTCATATgttttataaccacttgaggatgagtaaatggtgagtgatttatcgttttgggtgaactatcactttaatttattttaattctattaattaaaaatgtatgtagcctagttttttctctctctcaaaaaacGTGTTAATACAAGAGATGTGAAGTCTCTTCCCAACAGACAACAATAAATTACTCACTCGGGTCTGCTTCCCTATAATGGCAAACatctttaaatctgatttatattGTTCTCGTAATTGTGGAACAGAATTAGCATCTTCAGGCCATTTATTGTCTTTTTTGtctttaattaacattaattatcatttgtgtatgtgtgttttaaacAATGTTGATTAGCCTAAGTTAAGGGTTCCCAAACTGTTTAGCCTGTTAGATCCCCAAAATACCAATTCCATTGATTTGCAACCTCCATTATCCTTTGAGCTGGTAATAaatacaaacattgcacacaatGTGAACACGCAGATAGaaactatataaacatgagcaaattgacaacacaaaaaaagtgcagCAGTCTATCAACCATATCATTTTTTGATTTAAAGATCATCCTCATCGTTCAGTTGTGgccttttttaaatgtacttgagTGTATAAAAGTGTAAAAGTTTAACATTGTGCCATAAAATCAGTCTGCTGCATCTGACTATTGCAATTGCTGTGTCATTAATAGAATGTAAACaacccaggggtcgcaatccaatgaaATAAAAGCTATAGGTGATGGCTTTTGATGTCCAGGtcgtttttttatgtaactattaaatactattaactttaactttattgacaaaatatggtaattctaatagtttatatatttatgagaCTTTTGGCCCCCAGGGGTTCCTGGCCCCACGGGAACCACTGGCCTAAGCAAGGCTACCAAATGGTATTATcaaatgtgatgttttatgtCAAGTCATGTacctaaaaatgttaaataccaCCTCAAGAATTCAGACATTACATTTGACAAATTTAACAAGTGCAACTCATTTTTATTACTCAAGACAAAACCCAAAACCAATGCTTCATTCAACCTGAGAACAGTTTATCAactcaataaataattaatctttttgtttttgtcttcatTCATGTAAGCGTACCTTGGCGGCACTGCCTACATAGCTTGAACAACTGAAAATAAATTTCACATTGCCCAATCCTCCTAGTTACACTTCCCGGATCTCGTGGACTCTTTTCAGTAaccatccaatcagcttgcagccCATGGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046960 True 2325 lncRNA 0.36 2 17332166 17334612

Neighbor

gene id symbol gene type direction distance location
XLOC_022875 NA coding upstream 6521 17322486 ~ 17325645 (+)
XLOC_022874 BX005392.4 coding upstream 12317 17318521 ~ 17319849 (+)
XLOC_022873 NA coding upstream 49631 17280840 ~ 17282535 (+)
XLOC_022872 spag6 coding upstream 52262 17269849 ~ 17279904 (+)
XLOC_022871 bmi1a coding upstream 64931 17260001 ~ 17267235 (+)
XLOC_022877 pdia4 coding downstream 66 17334678 ~ 17341458 (+)
XLOC_022878 ezh2 coding downstream 10909 17345521 ~ 17364456 (+)
XLOC_022879 CU041377.1 coding downstream 403907 17738519 ~ 17738635 (+)
XLOC_022880 BX255952.1 coding downstream 742931 18077543 ~ 18077659 (+)
XLOC_022881 tpk1 coding downstream 951815 18286427 ~ 18445254 (+)
XLOC_022863 NA non-coding upstream 430305 16719606 ~ 16901861 (+)
XLOC_022864 BX004771.1 non-coding upstream 524518 16807521 ~ 16807648 (+)
XLOC_022882 BX927064.1 non-coding downstream 1035090 18369702 ~ 18369817 (+)
XLOC_022883 NA non-coding downstream 1112077 18446689 ~ 18463437 (+)
XLOC_022884 NA non-coding downstream 1151057 18485669 ~ 18507866 (+)

Expression


Co-expression Network