XLOC_022875


Basic Information

Item Value
gene id XLOC_022875
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17322486 ~ 17325645 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046959
ataaatatatctgtcaattagtttaaaacaatatttaacttataACAACCCCAAAAAATTGCGTTGATAACTCAATTTTTCCACACCAATGGAGTTCTGGATTTCAAAGCTCCTCCCATACTGAACGATCAAGAGGCATGTCCGGACAAGTTTTAAGCAGACCATTTGGCACAAAGGATACTTTAAGGTGAGATATCTGGGTTTTATTTCATTTCCAAATCAATATTCTACATTCCATTAGTGTTGGCTACTCCTGGTAAATTATAGTTGATGTTGGCAGTGTTTTTTGACTAGAAAATAGTAGATAAGAAAGTAAAAACACATACGGTAAGCCAGAAAGGCAATTTAGTATATATGTCAAAATAACGAAGTTTATATAGTGGATGCTTTTTTCATATATAGTATTGCtttatcctgcatgttttatgttAGTTACCCTAGCAGAAATATATATTCTGGAGCTTGCTCACAGTTGTTATCCAAcctgaaatttgtattttattcctCCTGCTCTTAtggaaaatattacatttatctaCTGATTGCTAAGATTTTCATACAAAGTTCATGCAACTGTATTACAACTTTCTAGGCTGATCTGTATTTTAGATATAAGTAGGCTTGTATATAAAATAGGTTGGGGGTGCAAAATGTGTAAATTTGAAACATCAACATAAATAGTTTTGCTAAAACATTACAGACTACACCATGGTAATTGTGGGCAACCATTTCCATGCCTCTGTCaagattgtttgtgttttttcagaACATGGGGCAGCCTTAGATCACATTTATCAAGACATCAAACTTAGATAACCTCCAGATTTGcagaaagtttttattttacttgtcctTGTTGCTATGCCATGACAATTtccatagaaataaaaaaaaaaaaaacacgaaactATCATCTGTGTATTTCAGAACTGCAATTTCAGAACTAACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGAGCTGTCTGATGAAGGTCAAGATGACAATAATGATGTGACAGTCCTGCCaaactgcatagaaaaaaaatggctttgttgtttctaaaacggGAGAGCACTTTTAATGTATCTTACGGTGTATAGATAGAGGTATAGAAGAGGTTGTTAATAAGTTAAATTTTATATCTCGATCAGCATCTGGACCCATCATCAAAGGTATTTTACAGTCCTGCTTGGGTTGTAAAGCCCATCTTACAGTCCACAAATCTGTCTAATGTAAACCTTTTGCATGAagtaacacaaataaacaattttCAAGTTGTTGCAGATAAAATGGGCAAGAAAAAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGGTGCAACACAGgtaagtttagttttatttttagtctAGTTTCACAATTTTGCAAGAAAATCATCTTCAAGTTATTTATGCTAAAAACTTCTTATAACAATAACATATTACATGTTATTTGTTGTGTTACACATTGTATacaattattccattatttaattattctattTTTTCTACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAACGCACCCAAAACTAATGGACCTGGCCTCATCCAGGAGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGgtattgtaaataatttgtacACACTAGAATAGTTTAGATTTGTGTTAAATTGTTAGGTTGCCATCAGTTGTTTGTTCAGATAAAACTATATTCATTTACTGTAGGTACTTTATcttgatatatatttttctaattaaaCAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGAGtattacaatgttttaaaattaaaattaaatcttcCCTTGACAGTGGAAACATACAAGACAAAATATATGCTCAATGACTGCTCTCTTTTAGTTTAATGTGTAGGTATATTACATTGTCCACACACACTGGTTTTACCTAGCTCTGTGTTATAATAACAATGTACTATTTAGTTCAATAAACAGATGTTGACAATAATGAGAAAGATTTGTAAAATGGGTATGACTGTTGCGTTTCACTTttccatttaaattaaattgtgaaaCGAATTATTCTTATGATTGAGTAGCTGGGTGCATGACCATGTAAgggataaaataaaacaaagtttccAGAGATTAGCTGAAATCaaatgtaagtaaaataaaaagctgaagtaattataaatttaattatctCTATCATgctaatctattttttttttatcttgcttTACAAGAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACAATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATAACTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTGTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTtacatatgtttgtttataataatacaaatgttacATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaatgaataaaaagttactgaaatt
>TCONS_00045481
AGACCATTTGGCACAAAGGATACTTTAAGAAGCCGAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGAGGTATAGAAGAGGTTGTTAATAAGTTAAATTTTATATCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAAAAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGGTGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAACGCACCCAAAACTAATGGACCTGGCCTCATCCAGGAGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACAATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATAACTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTGTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTtacatatgtttgtttataataatacaaatgttacATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaatgaataaaaagttactgaaatt
>TCONS_00045480
AGACCATTTGGCACAAAGGATACTTTAAGAACTGCAATTTCAGAACTAACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGAGCTGTCTGATGAAGGTCAAGATGACAATAATGATGTGACAGTCCTGCCaaactgcatagaaaaaaaatggctttgttgtttctaaaacggGAGAGCACTTTTAATGTATCTTACGGTGTATAGATAGAGGTATAGAAGAGGTTGTTAATAAGTTAAATTTTATATCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAAAAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGGTGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAACGCACCCAAAACTAATGGACCTGGCCTCATCCAGGAGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGAGtattacaatgttttaaaattaaaattaaatcttcCCTTGACAGTGGAAACATACAAGACAAAATATATGCTCAATGACTGCTCTCTTTTAGTTTAATGTGTAGGTATATTACATTGTCCACACACACTGGTTTTACCTAGCTCTGTGTTATAATAACAATGTACTATTTAGTTCAATAAACAGATGTTGACAATAATGAGAAAGATTTGTAAAATGGGTATGACTGTTGCGTTTCACTTttccatttaaattaaattgtgaaaCGAATTATTCTTATGATTGAGTAGCTGGGTGCATGACCATGTAAgggataaaataaaacaaagtttccAGAGATTAGCTGAAATCaaatgtaagtaaaataaaaagctgaagtaattataaatttaattatctCTATCATgctaatctattttttttttatcttgcttTACAAGAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACAATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATAACTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTGTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTtacatatgtttgtttataataatacaaatgttacATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaatgaataaaaagttactgaaatt

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0042693 muscle cell fate commitment biological_process
GO:0042694 muscle cell fate specification biological_process
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0036388 pre-replicative complex assembly biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006457 protein folding biological_process
GO:0033260 nuclear DNA replication biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0042555 MCM complex cellular_component
GO:0070035 obsolete purine NTP-dependent helicase activity molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046959 False 3160 lncRNA 0.33 1 17322486 17325645
TCONS_00045481 False 1178 processed_transcript 0.36 7 17322644 17325645
TCONS_00045480 True 1851 lncRNA 0.34 5 17322644 17325645

Neighbor

gene id symbol gene type direction distance location
XLOC_022874 BX005392.4 coding upstream 2637 17318521 ~ 17319849 (+)
XLOC_022873 NA coding upstream 39951 17280840 ~ 17282535 (+)
XLOC_022872 spag6 coding upstream 42582 17269849 ~ 17279904 (+)
XLOC_022871 bmi1a coding upstream 55251 17260001 ~ 17267235 (+)
XLOC_022870 commd3 coding upstream 62843 17256793 ~ 17259643 (+)
XLOC_022876 NA coding downstream 6521 17332166 ~ 17334612 (+)
XLOC_022877 pdia4 coding downstream 9033 17334678 ~ 17341458 (+)
XLOC_022878 ezh2 coding downstream 19876 17345521 ~ 17364456 (+)
XLOC_022879 CU041377.1 coding downstream 412874 17738519 ~ 17738635 (+)
XLOC_022880 BX255952.1 coding downstream 751898 18077543 ~ 18077659 (+)
XLOC_022863 NA non-coding upstream 420625 16719606 ~ 16901861 (+)
XLOC_022864 BX004771.1 non-coding upstream 514838 16807521 ~ 16807648 (+)
XLOC_022861 BX005275.1 non-coding upstream 1113486 16207562 ~ 16209000 (+)
XLOC_022882 BX927064.1 non-coding downstream 1044057 18369702 ~ 18369817 (+)
XLOC_022883 NA non-coding downstream 1121044 18446689 ~ 18463437 (+)

Expression


Co-expression Network