XLOC_022861 (BX005275.1)


Basic Information

Item Value
gene id XLOC_022861
gene name BX005275.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 16207562 ~ 16209000 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045438
ACAATGCCCTCGGTAAAGACGTGATGTTGACTGCTGTATACAAACGTGTAAGATTTACGATTAAAACAGCCTTGTACATCGCTCCTGAGGTTGGGTTTGACTATTCTGAGGCTATATGACTTGCATAAGGAGATTGTGATGTGGGTTCTTGCTTGAAGACTcaggttggagcaaaactgtgcagagctgcggtcctccaagaattgactttgacacctatgccttactagtatcgggttggaccccatttgccttcagaactgccataatccttcgtggcatagattc
>TCONS_00045439
CAATGCCCTCGGTAAAGACGTGATGTTGACTGCTGTATACAAACGTGTAAGATTTACGATTAAAACAGGTTGGTAATATGTTTAAGTGTCCGTTTTGTGTGAATATTTTAAGAGCTTTACACATGATACACACTCATCTGCAAAGTTACAAACCTCGCACAGTTTATCACGAACCCTTGTACATCGCTCCTGAGGTTGGGTTTGACTATTCTGAGGCTATATGACTTGCATAAGGAGATTGTGATGTGGGTTCTTGCTTGAAGACTcagg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096436

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045438 False 288 lncRNA 0.45 4 16207562 16209000
TCONS_00045439 True 270 lncRNA 0.40 3 16207563 16208607

Neighbor

gene id symbol gene type direction distance location
XLOC_022859 NA coding upstream 12832 16166765 ~ 16194730 (+)
XLOC_022860 BX005275.2 coding upstream 30262 16174199 ~ 16177300 (+)
XLOC_022858 si:dkey-118j18.2 coding upstream 42804 16149251 ~ 16164758 (+)
XLOC_022857 TIMM21 coding upstream 59857 16140423 ~ 16147705 (+)
XLOC_022856 neto1l coding upstream 70877 15897717 ~ 16136685 (+)
XLOC_022862 sema5a coding downstream 184302 16393302 ~ 16706981 (+)
XLOC_022863 NA coding downstream 510606 16719606 ~ 16901861 (+)
XLOC_022864 BX004771.1 coding downstream 598521 16807521 ~ 16807648 (+)
XLOC_022865 cct5 coding downstream 696188 16905188 ~ 16912897 (+)
XLOC_022866 eif2s3 coding downstream 774269 16983269 ~ 17002950 (+)
XLOC_022853 BX640518.1 non-coding upstream 794457 15412989 ~ 15413105 (+)
XLOC_022846 BX294113.1 non-coding upstream 1571259 14623831 ~ 14636303 (+)
XLOC_022847 BX294113.3 non-coding upstream 1572143 14635303 ~ 14635419 (+)
XLOC_022873 NA non-coding downstream 1071840 17280840 ~ 17282535 (+)
XLOC_022874 BX005392.4 non-coding downstream 1109521 17318521 ~ 17319849 (+)
XLOC_022875 NA non-coding downstream 1113486 17322486 ~ 17325645 (+)

Expression


Co-expression Network