tsc1b (LOC106565454)


Basic Information

Item Value
gene id tsc1b
gene name LOC106565454
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 33226370 ~ 33259075 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977308.1
AAGTTTCTCGTGGATTGAGGACATGAGTGCGGTGCACTGAAATATGACTGAAGCAGAATGGAAGTATTTAAATGAGCCTAGCTGTAGCATTATTTATGTAAATAGACTAGTCAGTGTCAGATTCTGAATGGCTCGCTAATAAGGGATTACTTTGCGTGCGAGTCAGCGGAGGTTGATTAAAGAGGGATGGGCTGTGATGTGTTCAAGATGGCGGCGCCCTGTGGAGTGTAGAGACTCTAACAGtggtgcctggagacTGTATTGGCCGGAGGCCCAGGGAGCCCTCCAGGCAGGACGCTGTGAGAGAGACGACTGGGACACCCCCTGCCCTCCAGGCCTTGACGGAGACTGTCTGCCACCACCTCACCCTCCGCTGTCAACATGGCCAGAGAGCAGCCCAACGTTGGggacctcctccctctcctggagTCCTCTGACATACGCCAACTGGAGGAGATCAAAGGCCTTATCAATGAGCACCTCAGCACTGAGCGGGGGTCAATGCTGCTGAATGGACTGGTGGACTACTTCTTGGAGACTAACTCGGCCCAGGCCATGCATATCCTCTCGTCAGTCAGAGAGCCACATGATAAGCACCTGCTGGACAAGATGAACGAGTGTATGACCAAACAGGCCTGCCGGCTGCCCACCCTCACTCTGCTTGGCCACGTAGTCCGCAAGCAGCCGTCCTGGATCCATAAGATCGCCCGCTACCCGCTGCTGCTCTCGCTGCTCAAATGCCTCAAGACGGATTCAGACGTTGTGGTCCTCATAACTGGAGTCCTGGTGTTGATCACTCTGCTACCCATGATCCCCCAGGCTGGCAAACAACACCTGTATGAGTTCTTTGACATCTTTGGACGCCTGGCTTCCTGGAACCTGAAGAACCCAGGCCACGTCTCCGAGGTATACCTCATCCACCTGCACGCCAGCGTCTACTCGCTCTTCCACCGCCTCTACGGCATGTACCCCTGCAACTTTGTGTCCTACCTGCGCTCCCACTACAGCATGAAGGAGAACATGGACACCTTTGAGGAAGTGGTGAAGCCAATGCTGGAACACGTCCGTATACACCCGGAACTAGTGACTGGAACTAAGGACCATGAGCTTGATCCCACCAGATGGAAGAGATTTGAGATCCATGACATCGTCATTGAATGCGCCAAAGTGTCTCTGGACCCCAAGGAAGCGTCGTGTGAGGAGGGCTATGCGACCATGCCCGAGAACCTCTACCCCCAGATGCAGCTTTGTCCACAAGACTCAGCCTCTAGCCCCTACACAGACTTCCACAGCAGCTTCGGAAGCTCCTCTTTGACCCCCTTATCTGCCCCACGCCAGCCCCAACCACCACCCCTGTCCCTGCCCCCTCTGTCAGGGACTCAGTCCTCCTATCGCAGCCCCCAGACCTCCAGACGTCAGAACTCTAGCTGTGAACTCAACTCGACCTGTGGGGGCAAAGAACTGTGGAGCCCCTCCTCCCAGTGTGGAATGGCCACACCCCCTTCCTCCAGGGGCATGTCACCTAACCCAGAGCTCTCCCATAGTGCCTCTTACCTCTCAGGCCACCGCGTCCACAGCACATCAGGAGGGAAAGGAACACCTGCCTCAAGTACTCCTGCCACCACCTCCCCGCCCCCCACCCTCTCTGATGAGTTCCCCACCATCCCCCTGACATCCAACACCGCTAGTCCACCACGGAAGCATGGCTGCCCTGTAGAAGCATCCAAACCTAGCCTGGTGAGGCAAGAACCAATCCGAGATCCTGAGAAAGATGAAGAGGTCATCAACAACAGAGATGCAAGTGATGGTGGGACCATTTCCATGACGCTGACAGAACTTTCAGTCTTTATGCAGGAGCAGGAGCTGGAGCTTCAGctgaggacagagaaggagagggaagaagCTGCCATCACAGAGGAGCTCCTGGAGATCACAGAGGACAAGCGAGACTTGGCTGCCCTGAGGGGCTTTGACTCCCCCTTCTACCGCACCACTGAGACCCTGACAGGTACCCAGGAGAAGGCCCTGCCCAACCACCCACTGGGTGGCCTCATGCTACCCCGGGACCCCCACCATGCGGTGTCCACCCCAGACAAGGCACTGGAGAATGCCCAGGGCGCTAATGGTGGTGGGGACAATAGTAGGGGCTCGGCCCTAGAGCAGTCCTGGTCTTTCCAACCCATGTGTCCCTTCAGCCCCATCGAACACCCACTCcaccggagcccctctgccccggAGTATGAGATGGCCAAGTTCGGTGGCCTGTTCTCCCCCAGCCCCTCCATCAAGAACCACTCCCTGCCCTATGAGGTCCTGTTTGATCTGGCTCTGCCCCGGGCTGCATCCCTCTTCGTGGGGAGGAGGACATCAGAGGCCCTGGGCAGGGCTGCTCTCGAGAGGCTGTGCCAGAGGCAGGAGGGgctggaggacagggaggagggtcAGGGGAGGGTGTCGGCTTCCCCCCTGGAGGTGCTGGATCGTCTCGTTCAGCAGGGAAGCGACGCCCACGACAAGGTGCTCAACAGaTTACCTTTGCCAAGCAAGTCAGCTGACTGGACGCATTTTGGAGGCACGGCGCCGCTGGACGAGCTGCACACGTTGCGTAGCCAGCTGCTCCTGCTGCACAGCCAGCTGCTGTACGAACGCTACAAGCGAGAGCAGCACGCCGTCCGCAACCGACGCCTACTGCGACGCGTCATCAACGCCACCGCACTGGAGGAACAGAACAACGCCATGAAGGACCAGCTGAACCTCCAGAGTGTGGACATCATGTCtctgaaggagagtctgcaggtgGAGCAGCAGCGCTGCAGACAGCTGTGGGACGACCGAGAGACCGTGGTCACCAGACTACACAGCCAGGTCCGCCAGCTACAACAGGGCCGGGACGACTACTACACCAAGAACCAGGAACTACAGAGTCAGTTGAATGAGTATCAGAAGAAGATGAATGAGCTGGAGGCAGATCTGCAGAGGTCCAACAACAAGGTGTGTCACACGGGGCACCTTCTCAACCAGATGACTACCAAGCTGAGCACCAGTGAGCGCACCCAGCAGCAGATGAGCTTCCTGAACAAGCAGCTGCTGCTCCTGGGGGAGGCCCACAAGCTGGCTGAACAGCGGCAGCAGCACACAGGCTCAGACAATGCCATGGAGGCCCAGATGGTGCAGGTGTCCTGGGGGAAGGAGGTGGAGAGGCTGAGGCAGAGCCTGCTGCAGCAGGGCCAGAAGCTGGAGGCAGCGCAGCAGCGGGTgggcgagctggagacacagcTCACCAAGAAGGAACACCTCATCGTGGAGCAGAAGAAATTTCTGGAGGACGTCAAGGGCCGGGCCAAGGGCGAGCTGCAGGCGTCAGACAGCAGGTACCAGGCCCAGAGGAGAGTGACCCAGCTCCTGCAGACGGAGCTGCTGCAGCTCTACAGTAGACTGGAAATGGAGGGTCATGCCACCCTGACCACACCCTCCGCAGGGGGCAGCAGTACCGATCCTGGCCCTCCTATAGACTCTAGTATCATGGAGCCAGATGGACCCGTCACATCAGGAACCAATGAGTGGTCAGATAACGGCAGACCACCTCAGTCCCCACGACGCAACGGCAGCACTTTATCTCCAGGGCAACCTATGGCGAACAACCCCCCTAAGAAGCTCCCTGTCAACTCGGTCAACGGCACCCAGGAAGTCCCCAAGCCTCTCCTTGTGGAGCCTTCCTGTACCCATGCCCCCCCACTGCCCCCCGACGCCACCCCCCTTACTGTTGGCTCCTACCCCAGCGCCAAGAGCTTCCTGGGCATGCGGGCGCGAGAGCTGTTCCGGAACAAGAGCGAGAGCCAGTGTGACGAGGAGCCGCCACCCCCCCCGCCTGGCCGGCCTTTCACAGGGCCTGAAGACTGAGCTGTGTGTGGAGCCCTCATTTCCTCCACTGGGGAATTCTCTGACGTGTCCTGTCTCTAACCCTGTCCTTAACCTTACCTTTTCCCCTGCCCTTGCCTCTATACTGGGTGCCCCTCTCACTGTGCCCGTGAAGGAGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K07206 TSC1; tuberous sclerosis 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977308.1 True 4038 mRNA 0.59 22 33226370 33259075

Neighbor

gene id symbol gene type direction distance location
LOC110523632 LOC106565566 coding upstream 262401 32909966 ~ 32963969 (+)
LOC110523631 LOC106565876 coding upstream 322607 32900863 ~ 32903763 (+)
LOC110522915 NA coding upstream 329560 32885656 ~ 32896810 (+)
LOC110523629 LOC107720969 coding upstream 342271 32762181 ~ 32884099 (+)
LOC110523627 LOC106565641 coding upstream 489817 32734905 ~ 32736553 (+)
LOC110523644 LOC106565434 coding downstream 158343 33417418 ~ 33446506 (+)
LOC110523645 LOC106565424 coding downstream 231048 33490123 ~ 33492398 (+)
LOC100136128 LOC106565394 coding downstream 381413 33640488 ~ 33799714 (+)
LOC110523646 LOC106565369 coding downstream 571631 33830706 ~ 33844121 (+)
LOC110523649 LOC106565324 coding downstream 587698 33846773 ~ 34088984 (+)
G391525 NA non-coding upstream 26803 33193270 ~ 33199567 (+)
G391497 NA non-coding upstream 90763 33135243 ~ 33135607 (+)
G391416 NA non-coding upstream 125544 33003985 ~ 33100826 (+)
G391450 NA non-coding upstream 162197 33063079 ~ 33064173 (+)
G391436 NA non-coding upstream 179945 33040578 ~ 33046425 (+)
G391569 NA non-coding downstream 34617 33293692 ~ 33294263 (+)
G391772 NA non-coding downstream 78679 33337754 ~ 33338043 (+)
G391801 NA non-coding downstream 97768 33356843 ~ 33357184 (+)
G391818 NA non-coding downstream 126548 33385623 ~ 33385836 (+)
G391830 NA non-coding downstream 148215 33407290 ~ 33407623 (+)
G391513 LOC100136561 other upstream 63390 33158826 ~ 33162980 (+)
G390393 NA other upstream 1005837 32220181 ~ 32220533 (+)
G390184 NA other upstream 1265625 31960355 ~ 31960745 (+)
G388019 NA other upstream 2938546 30286951 ~ 30287824 (+)
G387516 NA other upstream 3328236 29896986 ~ 29898134 (+)
G391805 NA other downstream 101882 33360957 ~ 33361341 (+)
G392776 NA other downstream 888399 34147474 ~ 34150795 (+)
G394882 NA other downstream 2646037 35905112 ~ 35905781 (+)
G394910 NA other downstream 2707862 35966937 ~ 36004829 (+)
you2 you2 other downstream 2774185 36033260 ~ 36034806 (+)

Expression


Co-expression Network