trnaa-ugc-12


Basic Information

Item Value
gene id trnaa-ugc-12
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37606177 ~ 37606250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-12
gtcctgtgtggctcagttggtagagcatggcgcttgcaacgccagggttgtgggtttgattcctacGGAGGACA

Function

NR:

description
cholesteryl ester transfer protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-12 True 74 mRNA 0.59 1 37606177 37606250

Neighbor

gene id symbol gene type direction distance location
LOC110523753 LOC106564257 coding upstream 1752 37591173 ~ 37604425 (+)
LOC110523751 NA coding upstream 33372 37569014 ~ 37572805 (+)
LOC110523748 LOC106564295 coding upstream 57108 37520545 ~ 37549069 (+)
m17 m17 coding upstream 194612 37409195 ~ 37411565 (+)
LOC110523739 LOC104958930 coding upstream 216151 37384835 ~ 37390026 (+)
LOC110523754 LOC106564246 coding downstream 50340 37656590 ~ 37690760 (+)
srsf9 sfrs9 coding downstream 311531 37917781 ~ 37921282 (+)
LOC110523757 NA coding downstream 337608 37943858 ~ 37964766 (+)
LOC110522927 LOC106565790 coding downstream 358608 37964858 ~ 37974637 (+)
LOC110523762 LOC106564143 coding downstream 580011 38186261 ~ 38194092 (+)
G396744 NA non-coding upstream 18697 37587229 ~ 37587480 (+)
G396735 NA non-coding upstream 49620 37556251 ~ 37556557 (+)
G396731 NA non-coding upstream 51366 37554612 ~ 37554811 (+)
G396666 NA non-coding upstream 149986 37455898 ~ 37456191 (+)
G396820 NA non-coding downstream 109384 37715634 ~ 37782939 (+)
G396979 NA non-coding downstream 331716 37937966 ~ 37954156 (+)
G396991 NA non-coding downstream 360060 37966310 ~ 37966520 (+)
G396992 NA non-coding downstream 370261 37976511 ~ 37976790 (+)
G396022 kdm2b other upstream 640525 36965084 ~ 36965652 (+)
G395034 NA other upstream 1304887 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1399561 36202901 ~ 36206616 (+)
you2 you2 other upstream 1571410 36033260 ~ 36034806 (+)
LOC110523777 LOC106563114 other downstream 1708084 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2155866 39762116 ~ 39765843 (+)
G399919 NA other downstream 2835505 40441755 ~ 40442086 (+)
G400154 NA other downstream 3258679 40864929 ~ 40881126 (+)

Expression


Co-expression Network