G396979


Basic Information

Item Value
gene id G396979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37937966 ~ 37954156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU450474
ctGTTGATCTGGGGGTTTTAAAATCTGCACCATTGCACTCCATTCCGTAGGATACCTCACTATTCTCAATTTCATCTCGTCTTTACATCTGATATTATAAGCCTATGTGTGCAATTCGTTTttataggctacagtaggctCTGGTTTAAGTGTATTAATTTTGATaggctacagtaggctatagtttaggtgtaTTAGTTTttataggctacagtaggctaTAATGTAGGTGTAGCCTACTGtagggctgcatttcagataCACTTGACACCGTGTCATAGACCAATATCTATCTTGTGTTAAGCTATATAAAacggcagttgttgatgtGTTTCACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU450474 True 340 lncRNA 0.38 2 37937966 37954156

Neighbor

gene id symbol gene type direction distance location
srsf9 sfrs9 coding upstream 16684 37917781 ~ 37921282 (+)
LOC110523754 LOC106564246 coding upstream 247206 37656590 ~ 37690760 (+)
trnaa-ugc-12 NA coding upstream 331716 37606177 ~ 37606250 (+)
LOC110523753 LOC106564257 coding upstream 333541 37591173 ~ 37604425 (+)
LOC110523751 NA coding upstream 365161 37569014 ~ 37572805 (+)
LOC110522927 LOC106565790 coding downstream 10702 37964858 ~ 37974637 (+)
LOC110523762 LOC106564143 coding downstream 232105 38186261 ~ 38194092 (+)
cplane1 cssa01h5orf42 coding downstream 246358 38200514 ~ 38230167 (+)
LOC110523763 wdr70 coding downstream 276129 38230285 ~ 38316290 (+)
LOC110523766 LOC106564097 coding downstream 407010 38361166 ~ 38388097 (+)
G396820 NA non-coding upstream 155027 37715634 ~ 37782939 (+)
G396744 NA non-coding upstream 350486 37587229 ~ 37587480 (+)
G396735 NA non-coding upstream 381409 37556251 ~ 37556557 (+)
G396731 NA non-coding upstream 383155 37554612 ~ 37554811 (+)
G396991 NA non-coding downstream 12154 37966310 ~ 37966520 (+)
G396992 NA non-coding downstream 22355 37976511 ~ 37976790 (+)
G396994 NA non-coding downstream 23535 37977691 ~ 37978297 (+)
G396974 NA non-coding downstream 28060 37982216 ~ 37984991 (+)
m17 m17 other upstream 527067 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 972314 36965084 ~ 36965652 (+)
G395034 NA other upstream 1636676 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1731350 36202901 ~ 36206616 (+)
LOC110523777 LOC106563114 other downstream 1360178 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 1807960 39762116 ~ 39765843 (+)
G399919 NA other downstream 2487599 40441755 ~ 40442086 (+)
G400154 NA other downstream 2910773 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 3151368 41105524 ~ 41106754 (+)

Expression


Co-expression Network