LOC110523754 (LOC106564246)


Basic Information

Item Value
gene id LOC110523754
gene name LOC106564246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37656590 ~ 37690760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602728.2
CACTATGACCTCAGTTACCTTCTCACGTTCACTAAGAACACGACCGCGCGCGCATGCAGCTCCCTCTGCCCTGTCTTGTTCTATGCTGATAGAGAGGCGCATATCTTTGGATCCCCACCCTCACAAGCCAACCGGCAGTGCACTCATCTAGGATAACTCTACGTTGGAAACTAAACGAAGGACGGTTGGATATATGCCTTTTCCTAACCGTGGATTGCGTTGTGACTGCTGATGGTTTTAATTTTGTAGCCTATTGCCGTTTGGATTGCTGCCACCCGTGCGTTTATGTGGTCCATTTGGAGACGTTCCTTTGGGTTGCCTGTAttcgaatgtaaaaaaaaaaaggttttgttTCCCGCGCATCTCTCAAATGACTGAGCGCGGCGTGAAGAGGGGACCGCGTTCTCCACCTCAGTTCTATGTTAAAACCTTGGGCTAAAGTTTTCATGGACGGTGCCCTGGATTTTCCACTGCCATCTCTTTGACCGGGGTCTTTGTTTTTCAATCAGAGAACGAGTATTTTACCACGCACACAAGGGGTGCCTTTTGGATTCTATTTCCAAAATGAAGTCCGTTTTTATCCGAGTTGGCGAACTCTACATTCTGATCCTCTGGCTTCAATTAGTGCCTCCGATAGAGGGTCGAGTGGAGGGCTGCCCAGCGCCATGCATATGCCACAGCGAGCCACGGCCCACCCTGGCCTGCCAGCAGCAGGGCCTCTACTCCATCCCCACAGAGATCCCGGTCCACAGCCAACGAATTTTCCTCCAGAACAACAAGCTAACTGTGGTGCGCTCCACCAGCTTCAGCCCCTGCAGGAACCTTACCGTCCTCTGGCTCTACTCCAACAACATCAGCCACATTGAGGCCGGGGCCTTTTACGGCCTGGAGAGGCTGGAGGAGCTGGACATAGGGGACAATGATTTAAGGATCATCAGCCCCACAGCTTTCAGAGGCCTCTCCAGACTGCACACCCTGCATCTGCACAGGTGTGGCTTGTCTGAGCTGCCTGTGGGTGTGTTTAGGGGACTCTTTTCCCTGCAGCACCTCTATCTCCAGGACAACAGTTTACTAACTCTGCATGACGATACGTTTCTGGACCTGGCTAACCTGACCTACCTGTTCCTCCACAACAACAAGATAAAGACTGTGACGGATCACATGCTGCGCGGCTTGGTAAGCCTGGATCGCTTGCTTCTCCATCAGAATCTAGTGACCTTTGTCCAGCGCAAGGCATTTCATGACCTGCGCAAGCTGACCACTTTGTTTCTGTTCTTCAATAATTTAACAGTGTTGACAGGGGAGACCATGGACCCATTGGTGTCCCTCCAGTACCTGCGTCTGAATGGGAACCAGTGGATCTGTGACTGCCGGGCCAGGACCCTGTGGGACTGGTTCAAGGGCTTCAAAGGGTCTAGCTCAGAGCTTGAGTGCCATGTTCCAGCTAGACTGGCTGGGAAAGACCTGAAACGACTAAAGAACCCTGACCTGGAGGGTTGTTATGAGAGCTCTCAACATACTTGGGTTAGTGTGTTCAGTTCTAAGGCTCGCTCTGGAAAACTCACCACGGAGAGTCCACTTAGGGCTGGTATTCCTAGGTGCTGCCTCTCAGACAACGACAAGTCCTCCATCATCTCCAGTAAGGGTCTTCCAGATCAGTCCTCCTACAACAGCAGACAAATCACCAACAATCCTCTGAAGGAGAAGGAAAACATCTCCAAAACTAAGCTTATGGAAGCTGACCCCAACGAACCCCAGAACAAAGAGAGCCTGAACGATGGGCCAGGAGGAACATTATCTAACAATCTGGACCATTCATCAGAGGATCTAGATCCCTCCAATGACCCTGAAAAAAAGAAAATGTGTACAAAGGAGAACATGTCAGACTCTCTGTGTCTCAAGTCCCACGGATCTACAATCGGAGCATGGAGGCTTATCATTCTTCTTTTGTTTTGGCTATCCTTAGACTTCTGTTAGGAATTACAATCACAGAGGGATAATATGGGCCAGTGTAAGGCCAGTACAGGAGGCCCTGCTAAGTACCAGTGGTGGGAAGGGGGAAATCTTTCATAGATCTAAAGATATGAATCTGAAAAGAGAAATGGAAGCGCTAAAAAAACACACATCAACAAATGGATGCCTTTCTACAGTATGTCAATtccaaatgtatatatttaatgGATTTGTGCCCAGTTGATACTGTATGTTTTGCTCAGCTATGAAAATGACTTCTTCAGGGAGGTCCTATCGTCTCTAAGCTTACTCTGCCAATGGTGGTGACTGGTTATTACAAAGACAATGAAACAGTGCTACTGTTTAAAATCCAGAACCTTTCGAGGTTTCCTTCATAACAACCCCAAAGATGTGACAGATCTTACTCCATGTATTTTTGTTAATCCTTTTTTTTTTAGAGTGAAACATTGATTTAAATGCTATTTTTATGTTCATAAGTGTAAACGCACAAATGCTTTGGTCTCGATTCAATCCGTCTCGCCAAAGTTCAGCCTTAGCCAGATTGAGCTGAcacatgcagcgtttaccgtgaatgcagtctcctcGAACgtaggaacattgcctttacgtTTCAAACAGGTTGTCATGCTGACATTCAGTACTACAGATTGAACCGAGACCTTGATATTTCTGGGTTTAGTTTTCTTGTCACGCTGTGGTTACAGTTAGCATTCTCAAAAGAGTGCTTTCTTTTCATTCACTCTTCATTCATATGCATTTTATTTTACTTGtgtaaaagtataaatatatTACAAATAAAGTATTCTCTTTCTTACA

Function

NR:

description
reticulon-4 receptor-like

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process

KEGG:

id description
K16659 RTN4R, NGR; reticulon-4 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602728.2 True 2790 mRNA 0.47 2 37656590 37690760

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-12 NA coding upstream 50340 37606177 ~ 37606250 (+)
LOC110523753 LOC106564257 coding upstream 52165 37591173 ~ 37604425 (+)
LOC110523751 NA coding upstream 83785 37569014 ~ 37572805 (+)
LOC110523748 LOC106564295 coding upstream 107521 37520545 ~ 37549069 (+)
m17 m17 coding upstream 245025 37409195 ~ 37411565 (+)
srsf9 sfrs9 coding downstream 227021 37917781 ~ 37921282 (+)
LOC110523757 NA coding downstream 253098 37943858 ~ 37964766 (+)
LOC110522927 LOC106565790 coding downstream 274098 37964858 ~ 37974637 (+)
LOC110523762 LOC106564143 coding downstream 495501 38186261 ~ 38194092 (+)
cplane1 cssa01h5orf42 coding downstream 509754 38200514 ~ 38230167 (+)
G396744 NA non-coding upstream 69110 37587229 ~ 37587480 (+)
G396735 NA non-coding upstream 100033 37556251 ~ 37556557 (+)
G396731 NA non-coding upstream 101779 37554612 ~ 37554811 (+)
G396666 NA non-coding upstream 200399 37455898 ~ 37456191 (+)
G396820 NA non-coding downstream 24874 37715634 ~ 37782939 (+)
G396979 NA non-coding downstream 247206 37937966 ~ 37954156 (+)
G396991 NA non-coding downstream 275550 37966310 ~ 37966520 (+)
G396992 NA non-coding downstream 285751 37976511 ~ 37976790 (+)
G396022 kdm2b other upstream 690938 36965084 ~ 36965652 (+)
G395034 NA other upstream 1355300 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1449974 36202901 ~ 36206616 (+)
you2 you2 other upstream 1621823 36033260 ~ 36034806 (+)
LOC110523777 LOC106563114 other downstream 1623574 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2071356 39762116 ~ 39765843 (+)
G399919 NA other downstream 2750995 40441755 ~ 40442086 (+)
G400154 NA other downstream 3174169 40864929 ~ 40881126 (+)

Expression


Co-expression Network