LOC110525009 (gcnt1)


Basic Information

Item Value
gene id LOC110525009
gene name gcnt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18688289 ~ 18689957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525009
ctctatgaagcagtTATTTGGGATGCCGATCACATCCCGCAGGATGACAGTGACTGCAGCGCCAACCTGCAAGGCGACGAGATGGTCATCGAGCCGGCTAAGGTCCTGTCCATTTCACGCAGCTTCCTCAACATCACGTGGGTCCCAGACGAGCACTACCTGGAGCTGACCCAGGACTATCAGAGGTTCAGGTCTACTCGCAAGTTACTGGAGTTCCCACTGAGTTGTGAGGAAGAATACTTCCCCCTGGCCTTCTCGCTGGTTGTCCACCACAAGGTTGAGAACCTTGAGAGGCTGCTTAGAGCCATCTACCCCCCCCACAAAACTTTTACTGCATCCACGTGGATATAAAGGCCAAAGCATCCTTCCTTGCTTCCATCATAGCCATCACATCCTGCTTTGAAAATGTGTTCCTGGCCAGCCATCCATCCGGTCAGTGTGGTGTACGCGAGCTGGAGCCATGTCCAGGCTGACATCAACTGTATAAGTGATCTGTACAGGGCTAGTTCACACTGGAAGTATTTCATTAACCTCTGTGACCAGGACTTCCCCATCAAGACCAACCTGGAGATGGTGCGCAGCCTGTGGGCGCTGGCGGGGGACAACAGCATGGAGTCGGAGGCCAGGCCCAGAGGTAAGAAGTCGCGCTGGAAAAAAGTGCATCAGGTTGTTGATGGCAAACTTCAAAGAGCAGAACAAAGCTCCTCCGGCCTTTGGTATACCCATCTTGTCAGGCGGGGCATACATTGTGGTGAATAGGGGCTTTGTGCGTGCTGTGCTGGAGGACAGCAAGGTGTTGGCTCTTGTTCGGTGGGATAATGAGACTTGGAGTCCTGATGAGTTTCTGTGGGCCACCATCCAGAGGCTTCCTGGCGTGCCCGGCTCCATGCGCCCCAAGTTAGACATGACGGACATGCACGCCCTTGCCAGGCTGGTGAAGTGGCCGTGGTATAAAGGGGTATCTAAGTTAAAGTGATGTGTGTATATGAGGCCGGAGACCTGCAGTGGATGCTGCAGCAGCACCACCTCTTTGCCAATAAGTTTGACACGGACCCCATTGCTATCAGATGTCTGGAGGAGCACTTTAAGCATAAGGCCCTGGCAGAAATATACTAACGCAAATGACTGTGTGCTCAAAGTTTCTAACCTGTATTTGTGATCTCTGGGATCCAACTCAAATGGAACTTTTATGGCACCATCTCTGTCTTATCCATCTAAAGATCATCCTAGAAAGAGGTGGTTTTATTGGGATAAATAACCAAACTTATCAAACTTTTAAAATGTCCTAATGATTATTTACATCAATGGTCTTACCTTCATATTCCCGATTGCTGATTTAATATTGAAAGTGAAAGTACAGTGTGATTTGTAAATATGGAGAGGGTATTGATAGTTTTTTGACTGATAATATATTCAAGTTTATATCATCTGTCTCTCATACAGAAACTGTTGTGAAAAATCCAGTCCATGTTTTATTACCAATTGATGTTAGAATTCCAGTATTCCATGTTCTACTAAATAAATAGTTGCGCTACAGAGCTAGTGAACAACAATGTACAGTCGCTAATGAAATTCCTCACACCCCTTGCATGTCTTCACATACTGCTACCTTAAAATTCAATCTAAAAAGGGACTAAATTGTATTGTTTCCCTATCTAcacaacctaca

Function

symbol description
gcnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity. Involved in cell adhesion molecule production; glycoprotein biosynthetic process; and leukocyte tethering or rolling. Located in Golgi cisterna and trans-Golgi network.

NR:

description
LOW QUALITY PROTEIN: beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525009 True 1669 mRNA 0.47 1 18688289 18689957

Neighbor

gene id symbol gene type direction distance location
LOC110525109 LOC106585636 coding downstream 43312 18614764 ~ 18644977 (-)
LOC110525387 foxb2 coding downstream 51398 18634736 ~ 18636891 (-)
LOC110525386 vps13a coding downstream 90131 18533624 ~ 18598158 (-)
cep78 cep78 coding downstream 207635 18458958 ~ 18480654 (-)
golm1 golm1 coding downstream 232527 18444693 ~ 18455762 (-)
pcsk5b pcsk5 coding upstream 18733 18708690 ~ 18765899 (-)
LOC110525392 LOC106585693 coding upstream 84973 18774930 ~ 18823034 (-)
LOC118965125 NA coding upstream 111998 18801955 ~ 18802033 (-)
LOC110525395 glrx1 coding upstream 191213 18881170 ~ 18882810 (-)
LOC110525110 LOC106585703 coding upstream 337324 19027281 ~ 19061822 (-)
G482195 NA non-coding downstream 35243 18649962 ~ 18653046 (-)
G481767 NA non-coding downstream 315185 18372705 ~ 18373104 (-)
G481762 NA non-coding downstream 320623 18367430 ~ 18367666 (-)
G481724 NA non-coding downstream 390608 18297450 ~ 18297681 (-)
G481721 NA non-coding downstream 392793 18295297 ~ 18295496 (-)
G482281 NA non-coding upstream 150481 18840438 ~ 18841142 (-)
G482306 NA non-coding upstream 197413 18887370 ~ 18887602 (-)
G482309 NA non-coding upstream 199874 18889831 ~ 18890331 (-)
G482312 NA non-coding upstream 204684 18894641 ~ 18894901 (-)
LOC110525370 LOC106585675 other downstream 548635 18121017 ~ 18139654 (-)
git2a LOC106585671 other downstream 628904 18056651 ~ 18084926 (-)
G479533 NA other downstream 2094518 16589272 ~ 16593771 (-)
LOC110525318 rxra other downstream 2114308 16538121 ~ 16574149 (-)
G478734 NA other downstream 2804779 15881636 ~ 15883510 (-)
G482323 NA other upstream 267529 18957486 ~ 18963891 (-)
G482483 NA other upstream 501175 19191132 ~ 19191457 (-)
G482658 NA other upstream 620466 19310423 ~ 19310993 (-)
G482907 LOC106585357 other upstream 879250 19569207 ~ 19573427 (-)
G483145 NA other upstream 1020118 19710075 ~ 19720616 (-)

Expression


Co-expression Network