G482323


Basic Information

Item Value
gene id G482323
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18957486 ~ 18963891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU548119
CAGCAAATGGTAATATGTATTTAATAGTATTTAATAGTACAAATATCCAGCAAAGTGAATACAGAGGATTTATACACTTGTTAACTTTGGGTTCCCAGGCTAGATTGACCCAGAAGAGTTTGGATGGGTTTGCTTACATGTTTCCTAACAGCAGCACTTAGATTTCAATTTGTGATAATAGACCACATGTTTTCTGCAGCACAGGTTTTACATAGCACCGGTTTTATTTGTTGGCTGGGTTGATGATCTTGCCCATGAAGAGAATATTCTTGGTTTCCCGGTCCATGACAAAGACCATGAATGGATGGTCGAACTTCAAGACATGGGTGTGTCGGGAGGAGAGGGGCATAAGGACCACACCTGTGGCAGCTGCTGTGGTCGCTCCAGCCTCATCCACGTCCAAGGAGGCTTGTTGCACCCCTCTGAGACAGCCACCTTCAGTTCCTCTGATATTCCACTGAAGTCAGCTCGATCACTGAATATGTCCGGCATTCCGATTCCACTCAGAATGTCTTTGAGGGAGTATGTTGTGGTGATGGACAACTTGGGAACATATACATGATATACCTGGCTTTCTTCCACCTGTGCCACTTGGTGATGTGGTTGAGGCATATGACCTCGTCCAGACTAGCGAGTCCCTTCTCCGGTAGCACCAACATCATGGACACTGAGTCGTTGTAGCGGAGATGCAGGATACTGGTGGAGATCTCCTGGTCGTAGTAGACGGAGAACCTCTTCATCATGCTCATCATCTGGACTGGAACAGTGGTGTTTTCATCCACATGAAATGTGTCCTCCTTTGTGTCTGCAGGGTTAAATGGAATCTCCCATTTTCCTTGAGAATTAGAAAATCGTAAAACATTTCAGGGTGTGATGTGATGAGTAAAAGTTACCAGACCAAAAGTGGTTTTCTGAGGGGGAGACCCAGCAAGAGATACAGCCAAAAGGTACAATGGCAtcaataacaccaacaacatccagagacaaaaaaaatccatattgaCAGAGTTAGAAGGAATTGATTCCACAAGATCTGTATCCATCAAAGAAGTGAACTCTACTTCATTTCGAGGACCCTATTTCATGTTTGTATTATTGTTTTTTGTCTAAAAGTTTGCAATATCCTCTTACCTTTGAAGTAAATGTAGCTGAGGAGGTACATGACAGTGGTTGGGTCCAGATCTTTGACTAACTTGTCTATCTTGCCTTTAGTCTTGTCCCCCACGTATGTATTGATTGTATCGATGGCCTTAGCAGTGTTGGTGAAGTCCACTGTGACACCCTCAGAAAGGTAGAAGCGCTTCAAGTCCTCAAGGAACTCGGGGTGTGGTGTAAAGGTGTTttgcatgaaaagtgcacttcctACGGTCAGGTTCACACCTATTTTCTGGTTGAGCTGTGTGAGGATGGTCTGGAAGGCCTGGTCCACCTGTTCTTGGGTCAGTAGGCTACTGTTGAAGCCCAGAACAGTGAAAAGCTGCTGGTGGGTTTGACCCTTGGCCCCCACAGACAGAGCGGCCAGGGCCAGGGACACACTCAGCGGGGAGAAGAACACATTCTTGCCCTGGTTGTCAGGCTGAGCCACCAGCTGATTGTACAGGCTATAAGCAAACTCCAAGTTTCCTTGGATCACTGGTTTAGTGCTGTTGTCACTGGgctcatgatgatgatgatgcccgTGGTCTCGTCCGTGACCATGGTCGCGCCTGTCACCATGGTCATGGTCGCGCCTGTCACCATGGTCATGGTCGCGCCCATGACCGTGGTCACGCCTGTCACCATGGTCATGGTCGCGCCCGTGACCGTGGTCGCGCCTGTCACCATGGTCATGGTTGCGCCCGTGACCGTGGTCGGGCCTGTCACCATGGTCATGGTCGCGACTGTGACCGTGGTGGCGGTCACCTCCGTTACCtttgtgacctctgacctctcccGGGCAGAGCACTCCCATAACGATCCACAAACACAGGGCTGTCCTCATCTTGGCAACCTTCCAGACAGCAGCTTTGGCGTCTTA

Function

NR:

description
alpha-1-antitrypsin-like protein CM55-ST

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU548119 True 2017 TUCP 0.49 4 18957486 18963891

Neighbor

gene id symbol gene type direction distance location
LOC110525395 glrx1 coding downstream 74827 18881170 ~ 18882810 (-)
LOC110525392 LOC106585693 coding downstream 134452 18774930 ~ 18823034 (-)
LOC118965125 NA coding downstream 155453 18801955 ~ 18802033 (-)
pcsk5b pcsk5 coding downstream 191587 18708690 ~ 18765899 (-)
LOC110525009 gcnt1 coding downstream 267529 18688289 ~ 18689957 (-)
LOC110525110 LOC106585703 coding upstream 63390 19027281 ~ 19061822 (-)
LOC110525401 LOC106585628 coding upstream 123538 19087429 ~ 19091087 (-)
LOC110525402 LOC106585704 coding upstream 265772 19229663 ~ 19261466 (-)
LOC110525404 LOC106585350 coding upstream 348370 19312261 ~ 19324418 (-)
LOC110525405 LOC106585351 coding upstream 408798 19372689 ~ 19379793 (-)
G482348 NA non-coding downstream 4451 18952615 ~ 18953035 (-)
G482337 NA non-coding downstream 32524 18924754 ~ 18924962 (-)
G482336 NA non-coding downstream 33532 18923686 ~ 18923954 (-)
G482313 NA non-coding downstream 61420 18895833 ~ 18896066 (-)
G482312 NA non-coding downstream 62585 18894641 ~ 18894901 (-)
G482353 NA non-coding upstream 3890 18967781 ~ 18968105 (-)
G482371 NA non-coding upstream 29617 18993508 ~ 18995298 (-)
G482379 NA non-coding upstream 44712 19008603 ~ 19008967 (-)
G482392 NA non-coding upstream 74130 19038021 ~ 19065110 (-)
G482437 NA non-coding upstream 136365 19100256 ~ 19123852 (-)
LOC110525370 LOC106585675 other downstream 817832 18121017 ~ 18139654 (-)
git2a LOC106585671 other downstream 898101 18056651 ~ 18084926 (-)
G479533 NA other downstream 2363715 16589272 ~ 16593771 (-)
LOC110525318 rxra other downstream 2383505 16538121 ~ 16574149 (-)
G478734 NA other downstream 3073976 15881636 ~ 15883510 (-)
G482483 NA other upstream 227241 19191132 ~ 19191457 (-)
G482658 NA other upstream 346532 19310423 ~ 19310993 (-)
G482907 LOC106585357 other upstream 605316 19569207 ~ 19573427 (-)
G483145 NA other upstream 746184 19710075 ~ 19720616 (-)
G483875 NA other upstream 969353 19933244 ~ 19935726 (-)

Expression


Co-expression Network