LOC110525887 (LOC106585127)


Basic Information

Item Value
gene id LOC110525887
gene name LOC106585127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37468758 ~ 37482116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606373.2
ACTGTGGACTGCAGTGATTCACTTGGCATGAGAGCCTGAGGTATTATGAGGAGAGATTGCCCTCTTGTGGTGCTATATTTTCCTCacaattttgtatttattttactctCAAAGGTTAGTTTCTCCTAACAGACAAAAACAGCTTACCGGAGGCCAGGACTCACATgagtaaaataatataataacattAAGATGACTCAGTGATTGGTCAGTGTGGAAAGTGGTGAATATTGCTTACATGTAATTGAAATGTTCTGTTTAAATGTGTACGATGTTTTGAAAAATATATCGAGATAGataccaaatcaaatgttatttgtcatacgcgacaaatatatatattctcaTTGTACCCTTAGTCACAACATTACAGAGATTAACTAAGTAAATACATGTGTTCATACAGTACTTttcactttatagtgcactaccggtcaaaagtagtgtactttataggtaatagggtgccatttgggaaacacagGCACTGTAGCAAGTCGTGTGTACACTAGCTATGACTAACAGGAAGTGGCCACGAACACCACCGTGCCATGAAAAACAAACTCCATCACTGACAGGCTGGGGCCGCCCAATAAGGTGTGGCCTGTAGATGGTATCACATGAGCATGCAACCAGGTAACCCATTAAACCCCTCAGACCATCACTTGTGTTTCAGTAGCTGTCTGCACTTCGACAATGACACATACACGTCTATTGTGGATCTTTACCCTAACTGCCTCCCTCAATCTCTCAGTGAGTCATGGTCCTCTTGAAGGAGTGAGGGACTATGAGGTAGTCCGACCCATCAGACTACATACTCTGCGGAAAAGAGAAACCGAGTCATCCAGGCCAGAAACTTTGAAGTATGCAATGAGAGTGGGTGGGAGAGACATTGAGATGCATCTGGAGAAGAATAGGGAATTACTCACGAAAGACTATAGTGAGACTTACTACACTGAGGATGGCACACCAGTCACCTCTACGCCTCAGGATATGGATCACTGCTACTATCACGGTAGTATTGTGGATGACAGTGAGTCTATGGTCAGCATGAGCACCTGCGATGGACTCAGTGGATATTTCAGAACGGCCGCCCAAAGGTACCTGATTGAGCCCCTGTCAGGGGGGGATGATGGGGATCACGCAGTGCTAAAATACGAGGACCAGAGCTCCAAGCCTATGCTGTGTGGAGTCACTAATTCTACCTGGAACGAAGACTACCCTTCCATTACTAGCAGGAGCCGTTCTCGAGCCTCAGGTCCATCTATACTTCAACAGCAAAAATATGTTGAGCTTGTCCTCGTTGCAGACAACCGTGAGTACAAGAAGATGGAGAGTAATCGGGGAGAGCTGCGTAAGAGGATATTTGAAGTGGTTAACTTTGTCAACATGGTGTATAAGCCCCTCAACACCTTTATTGCCCTGGTTGGTCTGGAGGTGTGGTCAGACAGTGATAAGATATCAGTGACCGCCCCTGCTGGCGCCACCCTGGACGCCTTTACCACGTGGAGGAACAACGACTTGGTCAAGACTAAGCCCCACGACAACGCGCACCTCATCAGTGGCATTGACTTTGAGGGATCGACGGTGGGTCTGGCCTTTATCGGGACTCTATGTTCAGGTCATTCTGCTGGGGTGGTGCAGGATCACAACCCCAGGGCCATAGCTGTGGGGGCCACATTGGCCCACGAGATGGGCCACAACCTGGGCATGAACCACGATGACTCCAGTGCCTGTGCTTGTTCTGGGAATAGCTGTGTAATGGCTGGGGCCCTCAGCTGGGATATCCCAAAGTCATTCAGTAGCTGCAGTAGTTTGAGCTATGACCAGTTCCTGAATAATCGTAACCCTGAGTGCCTACTGAACAAGCCAGACTACCGAAATGTGGAATCAACCCCAGTGTGTGGGAATGGCtttctggagagaggagaggagtgtgattGTGGCTCCCTGGAGGAGTGTACAAACCCTTGCTGTAATTCCACCAGCTGCACACTGACCAAAGGCTCAGAATGTGCTGCAGGAGAGTGCTGTGAAGACTGTAAGATCATGGCCTCGTCCACAGAGTGCAGAAGGAAACATGACGACTGTGACCTAGCGGAGTACTGCACAGGGAATTCAGCCGTCTGTCCTGAGGACGTCTTCTCTGTCAATGGGATCTCCTGTGACAGAGGGAGGGGCTACTGCCGCAACGGCCAGTGTCCACAGCATCATGACcagtgtgtgaaaatgtatgGCCCATCTGCTGAAAAGGCCACAACGTACTGCTATAACCAGAACACCAGAGGACTGTACTATGCCTACTGCAGACGGCCTTCACAGGACCAGTTCATCCCCTGCCAGAGCCAAGATGTGCAGTGCGGGAAACTCTTCTGCAAGAACGGTAATGATGACCCCAACTATGGTCGCATGGTGAAATTCTCCGACTGCAAAGCCACATTCTACGGTGATCACACCAGTGACTTTGGACAGGTGAACACGGGGACCAAGTGTAATGATGGGAAGGTGTGCAGCAAGAACGAGTGTGTGGATCTTGAGACAGCCTACGGACCCAAAGCCACCAACTGCTCAGCACGGTGCAAAGGACATGCTGTGTGTAATCACAGAATGGAGTGCCAGTGTGAACCTGGATGGTCACTTCCAGGCTGTGATACAAAGGATGGAAGCTTCACGGGCCTCTCCAGAGAAGGAGTGATTGGCATTGCGGTGACAGTCTCTCTGCTGCTTCTGGCTGCTATTGCTGGGGCAGTGGCTGTGTTCCTAAAGAAGAGACGACAGTCCCCCACTCTGCCTAGCCACCATACCCAGAAGAAAATCCATGAAGTGGACAACCACATCCATAAACTGCCAATTCCCAGCCAAAATAAAGCTATGCCACAGCAGCCCAAGCGACCAAAAGTAGCTCCGcccccaccccctccagctgCTAACCAATCACAAGTCCCGGTCTATGACTTCAGGGCCGCACGACAGgctctgagaccaccaccaccacgtGTCTGATGTCAACATCTAAAGGAGAAGAGTGGAAACATGAGGAACTCAACCCTTACCAAGACCTCAAATGCAGGGCCACAACTGCTAGGCCAGCCAGTGCAGTCAGTCCAGAGACCTCACTTCTTTGGGATAATTTTACAGAACCCTAGACTAGAGACAAGTTGGCTCTGCCACCACTTCTGAAAAAGCCTTGTCCCAGATCTCTTTGTGCTCTGGCCAACTCCATTGCTCAttgtttggcatgacaacgaGTGACAAGGAATTagcatgatggcacaaacagactggcactcaggctacctATGAAGCCCAAGGAATGTGTTTGTGCCAATGATGTGCATGATGGGTGAACTCAGTATAGTCACAAATATGGAATGGACTGAGGAGTCCTCTTTACGAGGAACGTCTTAAAAAATGACACTTTTTAGTATTCATTTTATACCTGTAATTTATTTGTCACTGCCATGTCAGGGAGTGAGTGTTCAGTATGTGATAATATGCCATTTATTTTCATACTATTACATTTATCAATGGTGACTGTATATTCCTGACTTTGGCTGAGTACTGAGTCTACagtaaatattttttattaattcaAAGATTTACTGAGCACAGCCATTGCTGACTAAAGttctgtatataaaaaaaaaatacacatgcTCAATACTGATAAAGTAACTCAATTTTAGATTTAGGAATTCTAGTGAGCAAGAatttacagatttttttttatagaacATTCTTAAATGCTGCACAACTAACTGCAAGTCTGCATCCACCGTCTGAGAATACAACTgcaaaactattcagaccccttggattttGTCACAAAGTGGGATTCAATTTGATTTGTCATTTTGGCAATCAACACAAAATACACggtcaaaaaaaaaaagtttaaaaaaagtatTCTTTAAGACGAATAAAAGTGGAACTAAAATAGtcgttacataagtattcagctccctgagtcactacatggtagaaacacctttggcataGATTACAGCTGTCAGTCTTCTTGGGGAAGTCTAAGATATGTACCTGGATGACTATGTATCTGGGTGATTTAATACATAATCCACAGCATTATATTAACCATGTTtaaaagagatattcaatgtctggtAGATGGGTAACTAACAAATCAATCACTGCCCTTCTGTTAAAGCTTTCCaaaagctccctggtctctgtagttaaatctgtgcttgaaattcaatacttgactgagggacctgaAAATGTATGTATGGGGGACTGAGGAAGGCTtagtcattccaaaatcatgtcaacccctattatttgTTAAGCCAAAAtgtactcctgaactaatttaggcttaactaaacaaaggggctgaatacttatgcaacaatATATTTAGTACTGAATTTATTAAAAGAAAAGAAAGTGAAAtccaagggttctgaatacttttgcaaggcactgtatctgtgtgTGAACGTGTCTGATTTGCTATTACAGTATACTATTACTTGAACAGCCTTTTCTGTAATCACAATCTCTCTCTCGGATTGTAAAAAGATGCCACCTGATTAAAATGTCAGgcataaaatgtttttatttttgacACGA

Function

NR:

description
zinc metalloproteinase-disintegrin-like brevilysin H2a isoform X1

GO: NA

KEGG:

id description
K08614 ADAM28; disintegrin and metalloproteinase domain-containing protein 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606373.2 True 4596 mRNA 0.45 22 37468758 37482116

Neighbor

gene id symbol gene type direction distance location
ogfod2 ogfod2 coding downstream 124674 37340705 ~ 37344084 (-)
LOC110525881 LOC106585120 coding downstream 275606 37160379 ~ 37193152 (-)
LOC110525880 casp3 coding downstream 365764 37097779 ~ 37102994 (-)
ncaph LOC106585119 coding downstream 391043 37068792 ~ 37077715 (-)
vamp8 LOC106585118 coding downstream 403728 37050701 ~ 37065030 (-)
zmat4a zmat4 coding upstream 146679 37628795 ~ 37778250 (-)
sfrp1a LOC106585130 coding upstream 342938 37825054 ~ 37842809 (-)
loxl2b LOC106585132 coding upstream 434314 37916430 ~ 37996902 (-)
hdr LOC106584955 coding upstream 529215 38011331 ~ 38018136 (-)
LOC110525897 LOC106585133 coding upstream 541902 38024018 ~ 38235017 (-)
G503195 NA non-coding downstream 81657 37386901 ~ 37387101 (-)
G503178 NA non-coding downstream 106699 37361031 ~ 37362059 (-)
G503159 LOC106580514 non-coding downstream 136888 37331484 ~ 37336552 (-)
G503114 NA non-coding downstream 201379 37267167 ~ 37267379 (-)
G503113 NA non-coding downstream 204381 37264167 ~ 37264377 (-)
G503311 NA non-coding upstream 60748 37542864 ~ 37543074 (-)
G503316 NA non-coding upstream 66540 37548656 ~ 37548926 (-)
G503320 NA non-coding upstream 69457 37551573 ~ 37551825 (-)
G503321 NA non-coding upstream 71115 37553231 ~ 37553592 (-)
G503327 NA non-coding upstream 79721 37561837 ~ 37562101 (-)
G503064 NA other downstream 227821 37239844 ~ 37240937 (-)
hk2 LOC106585103 other downstream 951490 36507843 ~ 36569143 (-)
G501142 NA other downstream 1700829 35765366 ~ 35767929 (-)
nsmfb nsmf other upstream 1472754 38926899 ~ 38967540 (-)
G505472 NA other upstream 1723762 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 1750577 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 1939552 39313471 ~ 39434971 (-)
G506641 NA other upstream 2141569 39623685 ~ 39624344 (-)

Expression


Co-expression Network