G503178


Basic Information

Item Value
gene id G503178
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37361031 ~ 37362059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU571416
GTGTTCTTACTCTTTTCATGTCCATATCCATCTGCAAGTAACGTTCTTCCAAAATATATTGCTGATCAAGAGAAGAGAAGCATGGATACTATACATTTTCTCTGCAGCAAtattgttatgttgctgttactCGCTGACAATATCCCCTTCGTTGAAGCACCTTCACTCTCACGCGCTCCGAAGACTAAACAGCTTGGCTGAAAAAAACGAGCAAGCTACAGACTGTAACCGGAAGCTGTGTGACTCTGGCACAGGATAGGAGGTGGGAATATATGACGTCATACTGAATGTAATACAGTCGAAGAGGCCTCTGCAACGATAAAACCAACAGGCAACAATATGACAAACAATATGTTTTCAGTAGCCTGGTTGCAGTCATGTCTTTGTTAATTCAGTACATTCACTTTTACTTGTGCAAAATCAAGTATTGGACAGCATCCACATGAAATCTAATCTATTCAGCAATGATAGTGTCATATAGTTTCAAGACATTGCACTTCCCATTGCATAGAATAAATACATTCTGCACATTCTCATC
>TU571420
GTGTTCTTACTCTTTTCATGTCCATATCCATCTGCAAGTAACGTTCTTCCAAAATATATTGCTGATCAAGAGAAGAGAAGCATGGATACTATACATTTTCTCTGCAGCAAtattgttatgttgctgttactCGCTGACAATATCCCCTTCGTTGAAGCACCTTCACTCTCACGCGCTCCGAAGACTAAACAGCTTGGCTGAAAAAAACGAGCAAGCTACAGACTGTAACCGGAAGCTGTGTGACTCTGGCACAGGATAGGAGGTGGGAATATATGACGTCATACTGAATGTAATACAGTCGAAGAGGCCTCTGCAACGATAAAACCAACAGGCAACAATATGACAAACAATATGTTTTCAGTAGCCTGGTTGCAGTCATGTCTTTGTTAATTCAGTACATTCACTTTTACTT
>TU571421
GTGTTCTTACTCTTTTCATGTCCATATCCATCTGCAAGTAACGTTCTTCCAAAATATATTGCTGATCAAGAGAAGAGAAGCATGGATACTATACATTTTCTCTGCAGCAAtattgttatgttgctgttactCGCTGACAATATCCCCTTCGTTGAAGCACCTTCACTCTCACGCGCTCCGAAGACTAAACAGCTTGGCTGAAAAAAACGAGCAAGCTACAGACTGTAACCGGAAGCTGTGTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU571416 False 538 lncRNA 0.40 2 37361031 37362059
TU571420 False 412 lncRNA 0.41 2 37361157 37362059
TU571421 True 245 lncRNA 0.42 2 37361324 37362059

Neighbor

gene id symbol gene type direction distance location
ogfod2 ogfod2 coding downstream 16947 37340705 ~ 37344084 (-)
LOC110525881 LOC106585120 coding downstream 167879 37160379 ~ 37193152 (-)
LOC110525880 casp3 coding downstream 258037 37097779 ~ 37102994 (-)
ncaph LOC106585119 coding downstream 283316 37068792 ~ 37077715 (-)
vamp8 LOC106585118 coding downstream 296001 37050701 ~ 37065030 (-)
LOC110525887 LOC106585127 coding upstream 106699 37468758 ~ 37482116 (-)
zmat4a zmat4 coding upstream 266736 37628795 ~ 37778250 (-)
sfrp1a LOC106585130 coding upstream 462995 37825054 ~ 37842809 (-)
loxl2b LOC106585132 coding upstream 554371 37916430 ~ 37996902 (-)
hdr LOC106584955 coding upstream 649272 38011331 ~ 38018136 (-)
G503159 LOC106580514 non-coding downstream 29161 37331484 ~ 37336552 (-)
G503114 NA non-coding downstream 93652 37267167 ~ 37267379 (-)
G503113 NA non-coding downstream 96654 37264167 ~ 37264377 (-)
G503112 NA non-coding downstream 97904 37262821 ~ 37263127 (-)
G503110 NA non-coding downstream 100143 37260529 ~ 37260888 (-)
G503195 NA non-coding upstream 24842 37386901 ~ 37387101 (-)
G503239 NA non-coding upstream 72635 37434694 ~ 37538914 (-)
G503311 NA non-coding upstream 180805 37542864 ~ 37543074 (-)
G503316 NA non-coding upstream 186597 37548656 ~ 37548926 (-)
G503320 NA non-coding upstream 189514 37551573 ~ 37551825 (-)
G503064 NA other downstream 120094 37239844 ~ 37240937 (-)
hk2 LOC106585103 other downstream 843763 36507843 ~ 36569143 (-)
G501142 NA other downstream 1593102 35765366 ~ 35767929 (-)
nsmfb nsmf other upstream 1592811 38926899 ~ 38967540 (-)
G505472 NA other upstream 1843819 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 1870634 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 2059609 39313471 ~ 39434971 (-)
G506641 NA other upstream 2261626 39623685 ~ 39624344 (-)

Expression


Co-expression Network