LOC100136024 (LOC100136024)


Basic Information

Item Value
gene id LOC100136024
gene name LOC100136024
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45904051 ~ 45907159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979104.1
ATGGACAGGACAGAGCTTTACAAACTGATGCTTTTATTTTCCAGATCTAACTACACAGACATGGATTTTGAGTCAAACTACAGTTTAATAAAGAACACCTCTGAAAGTGCAGCATGGAGCTCCAAGCTGCCTCAGGGTCTGGATCTGGAGGTATCCCATCACCCCATCACCATGCGTCACATTGCCAACCTCATCATCGCCATGGAGAGGTTAAAGGGTGGCGAGGGGGTTACCATGGGAACCGAGTTCAAGGACAAGGACCTGCTCAACTTCTTGCTGGAGAGTGCTGTGGAAGAACATATAGTGTTGGAGTTGGAGTCGGCACCCCCAGCGAGCAGGAGGGCAGCAGGGTTCAGCAGTACATCACAGTATGAGTGTAGCGTCACTGACTCTGAGAACAAGTGCTGGGTCCTGATGAATGAGGCTATGGAGCTGCACGCCATGATGCTCCAGGGAGGCAGCAGCTACCACAAAGtGCATTTGAACCTGTCTTCGTACGTCACGCCCGTCCCCATTGAGACTGAAGCCAGACCTGTAGCCCTAGGCATAAAGGGATCCAACCTCTACCTGTCCTGCTCCAAATCGGGAGGCAGGCCCACCCTGCACCTAGAGgaggTTGCGGACAAGGATCAGCTGAAGTCCATCAGCCAGCAGAGCGACATGGTGCGTTTCCTTTTCTACAGACGGAACACCGGGGTTGACATCAGTACCCTGGAGTCTGCCAGTTTCAGGAACTGGTTCATCAGCACGGACATGCAGCAGGACTACACCAAACCGGTGGACATGTGTCAGAAGGCAGCCCCCAACCGCCTTACCACCTTCACCATCCAGCGCCACAACTAAGATGGCCGCAAACACTGACACAACACCAGTCAGGAGGCCAAGGCCTCCAATAGAGATCCTCTACAATTCATGTGATTCTATTGGGCCTCTGTGATCAGGACTGGGTTGCCACTGTGGGTGCACGCACATCAACAGATTTAAGTGTATTGCTTGTAAGACACAAGAATTTCATGAGGTTTAGAGTATGTACCGAGTACAGCATGTTACCATTGGGGTGTATTGACGTAGTCAATATTGTGGTAAGCGCCCCTGATATAATCAAAATATGCTTAAAACGAAAACTAAGTCACTATTGTTCTACTATTTATTAATATATCTATAATTCAGTAATTTATACTTATTTATCAATGTATTTATTTGGCTCTGTTGATGTTGCACATATCCATTGATACATGCAAACATTTAAAATTCTTATGTGCTCTTTTTAATAAACATATTTAAATggaatatatatttctctct
>NM_001124347.2
ACAATTTAGGATTCACAAGAACTAAGGACTGAATACAAGACAACTGCTACCTACCTACAAACTTCAAAACAACTCATTAAGATCTAACTACACAGACATGGATTTTGAGTCAAACTACAGTTTAATAAAGAACACCTCTGAAAGTGCAGCATGGAGCTCCAAGCTGCCTCAGGGTCTGGATCTGGAGGTATCCCATCACCCCATCACCATGCGTCACATTGCCAACCTCATCATCGCCATGGAGAGGTTAAAGGGTGGCGAGGGGGTTACCATGGGAACCGAGTTCAAGGACAAGGACCTGCTCAACTTCTTGCTGGAGAGTGCTGTGGAAGAACATATAGTGTTGGAGTTGGAGTCGGCACCCCCAGCGAGCAGGAGGGCAGCAGGGTTCAGCAGTACATCACAGTATGAGTGTAGCGTCACTGACTCTGAGAACAAGTGCTGGGTCCTGATGAATGAGGCTATGGAGCTGCACGCCATGATGCTCCAGGGAGGCAGCAGCTACCACAAAGtGCATTTGAACCTGTCTTCGTACGTCACGCCCGTCCCCATTGAGACTGAAGCCAGACCTGTAGCCCTAGGCATAAAGGGATCCAACCTCTACCTGTCCTGCTCCAAATCGGGAGGCAGGCCCACCCTGCACCTAGAGgaggTTGCGGACAAGGATCAGCTGAAGTCCATCAGCCAGCAGAGCGACATGGTGCGTTTCCTTTTCTACAGACGGAACACCGGGGTTGACATCAGTACCCTGGAGTCTGCCAGTTTCAGGAACTGGTTCATCAGCACGGACATGCAGCAGGACTACACCAAACCGGTGGACATGTGTCAGAAGGCAGCCCCCAACCGCCTTACCACCTTCACCATCCAGCGCCACAACTAAGATGGCCGCAAACACTGACACAACACCAGTCAGGAGGCCAAGGCCTCCAATAGAGATCCTCTACAATTCATGTGATTCTATTGGGCCTCTGTGATCAGGACTGGGTTGCCACTGTGGGTGCACGCACATCAACAGATTTAAGTGTATTGCTTGTAAGACACAAGAATTTCATGAGGTTTAGAGTATGTACCGAGTACAGCATGTTACCATTGGGGTGTATTGACGTAGTCAATATTGTGGTAAGCGCCCCTGATATAATCAAAATATGCTTAAAACGAAAACTAAGTCACTATTGTTCTACTATTTATTAATATATCTATAATTCAGTAATTTATACTTATTTATCAATGTATTTATTTGGCTCTGTTGATGTTGCACATATCCATTGATACATGCAAACATTTAAAATTCTTATGTGCTCTTTTTAATAAACATATTTAAATggaa

Function

NR:

description
interleukin-1 beta

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0001660 fever generation biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005149 interleukin-1 receptor binding molecular_function

KEGG:

id description
K04519 IL1B; interleukin 1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979104.1 False 1305 mRNA 0.47 5 45904051 45906832
NM_001124347.2 True 1327 mRNA 0.47 6 45904066 45907159

Neighbor

gene id symbol gene type direction distance location
LOC110526037 LOC106584895 coding downstream 40810 45851230 ~ 45863241 (-)
LOC118965028 NA coding downstream 129123 45765669 ~ 45774928 (-)
LOC110526035 LOC105889509 coding downstream 160956 45655985 ~ 45743095 (-)
kremen1 kremen1 coding downstream 350677 45437334 ~ 45553374 (-)
coq5 coq5 coding downstream 485207 45414975 ~ 45418844 (-)
LOC110526038 LOC106584879 coding upstream 8613 45915772 ~ 45954751 (-)
LOC110526039 NA coding upstream 66614 45973773 ~ 45995386 (-)
apba1a apba1 coding upstream 355962 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 coding upstream 460542 46367701 ~ 46430607 (-)
rnf215 rnf215 coding upstream 554204 46461363 ~ 46471132 (-)
G513169 NA non-coding downstream 98085 45805734 ~ 45805966 (-)
G513163 NA non-coding downstream 104322 45799460 ~ 45799729 (-)
G513161 NA non-coding downstream 106639 45797178 ~ 45797412 (-)
G513159 NA non-coding downstream 107907 45795802 ~ 45796144 (-)
G513123 NA non-coding downstream 151156 45752667 ~ 45752895 (-)
G513773 NA non-coding upstream 40883 45948042 ~ 45979860 (-)
G513925 NA non-coding upstream 230999 46138158 ~ 46140055 (-)
G513940 NA non-coding upstream 259431 46166590 ~ 46166796 (-)
G513941 NA non-coding upstream 260623 46167782 ~ 46167986 (-)
G513942 NA non-coding upstream 261631 46168790 ~ 46169001 (-)
znrf3 LOC106584905 other downstream 627664 45270568 ~ 45384850 (-)
nf2a nf2 other downstream 1692228 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 1955662 43940790 ~ 43955257 (-)
G510310 NA other downstream 2379943 43523714 ~ 43524108 (-)
G509952 NA other downstream 2778664 43124581 ~ 43125387 (-)
G514434 NA other upstream 1003499 46910658 ~ 46910950 (-)
G514777 NA other upstream 1109003 47016162 ~ 47016496 (-)
G515094 LOC106585477 other upstream 2067634 47974793 ~ 47976975 (-)

Expression


Co-expression Network