LOC110526038 (LOC106584879)


Basic Information

Item Value
gene id LOC110526038
gene name LOC106584879
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45915772 ~ 45954751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606629.2
TTCGGCATGCGGCTGGAGAGGAGTGACAAGCCGGCCACGACCACCAATGATGGGGTGATTCAGGTAACAGAAGAGAGCAACATCTTCCTGAGGTTCTACGGGCTACAGATTCTTCCTGACACCTCATCACAGATCAGATTCACCGACCATGAACATGAGGAAGGTGATGTTACCAGCAACAATACTCCTTTTAACAGGACTTGTGCAGACTATAGCAAAGATATTGTTATCAGGGGTGGCATGAACGTGAGCCACCTCCGAACCTGGGGGGTTCTGAGTTTGAAAATCAAACCTCTCCGGAAGAGCGAGCTCCAGAGGGAGTATGGGCTGTGTGTCCAGGAAAGCCAGGATGGCAAGTGGTACCTGTTGGGTGAGGATGACGGGAGGCTGCGGGTGGTGGAGGAGAAGAAGTCCATGCTTCCTATGTGGTTCCAGTGCATCCTCATCTGCTGCCTGCTGGTACTGTCAGGTATGTTCAGCGGGCTCAACCTGGGACTCATGGCCCTGGATCCTATGGAGCTCCGGATAGTCCAGAGCTGCGGTACCGAGAAGGAGAAGAGGTATGCCAGCAAGATTGATCCCATTCGGAGGAAAGGGAACTATCTGCTATGCTCGTTGCTCCTGGGTAATGTGCTTGTCAACACAACTCTCACTATCCTTCTGGATGACTTGATAGGGTCAGGCCTGGGTGCTGTGGTCGCCTCCACTATAAGTATTGTCATATTTGGGGAGATTGTGCCCCAGGCTCTGTGCTCTCGCCACGGGTTGGCTGTAGGAGCCAACACTATTATGGTGACCAAGTTCTTCATGTTGGTCACCTTCCCCCTGTCATGGCCTATCAGTAAACTCCTGGACTGTGTCCTGGGCCAGGAGATTGGTACTGTGTACAACCGGGAGAAGCTAGTGGAGATGTTGAGGGTGACAGAACCATACAATGACCTGGTCAAAGAGGAGCTAAACATGATCCAAGGTGCGCTCGAGCTCAGGACCAAAACCGTTCAAGATGTCATGACACCGATCAGTAACTCCTTCATGATCCACAGCGACGCTGTGCTAGACTTCAACACCATGTCAGAGATCATGGAGAGCGGGTACACACGCATACCGGTGTTCGAGCACGAGCGGTCGAACATTGTGGATATCATGTTTGTCAAGGACCTGGCTTTCGTTGACCCGGATGACTGTACGACGCTGAAGACTATCACCAAGTTCTACAACCACACGGTCCACTTCGTGTTCCATGACACCAAGCTGGATTCCATGTTGGAGGAGTTCAAGAAAGgtaaGTCCCACCTGGCCATTGTTCAGAAGGTGAATGACGAGGGGGAGGGGGATCCATTCTATGAGGTGCTGGGATTGGTCACCCTGGAAGACGTCATCGAGGAGATCATCAAATCAGAGATCTTGGATGAGTCTGACCTCTACACTGACAACAGCAGAAACAGGAAAAAGGTGGCACCCAATAAGAACAAGAGGAACTTCTCTGCCTTCAAACAGAGCGAGAGCGAATCCAAAGTCAAGATCTCCCCTCAACTGCTATTGGCCGCTCACCGCTTCCTGACTACAGAGGTGACGTTGTTCAGCCCGTCCCAGATCTCAGACAAGGTTCTGTTGAGGATTCTAAGACACCCAGACGTGATCCAGGAGATCAAGTTTAATGACAGTGACAAACGCTGTCCTCAACACTATGTCTACCAGAGAGGGAAGGCAGTTGACTACTTCATACTCATATTGCAGggGCGAGTGGAAGTGGAGGCCGGGAACGAAAACATGAAGTTTGAGACAGGACCATTCTCCTTCTACGGTGTCATGGCCCTCAGTGCTCCCACGTTAGggttcCGCTGTCCGTCACACATCAGTGGTTTGAACAGGACCACATCTCTGAGCGCTGAAGATAGTACAGCGTCTCTGTCTGTCAGCGGCAGCAATAGCCAGCTCATTACACAGTTCACTATCCCCACACCAACATACACTCCCAACTTTTACGTAcgagctctcacagacctgcagTTTGTCAAGATCTCGCAGGCCCAGTACCAGAACGGTGTGATGTCGTCTCGTCTGGACTCCATCCCCCAGTCACCTGACTTCGGCCAGCCTCGACTGGAGGGTACCACGTCCCCCGTTTTGACCACCACTCCCGGCAAACTATCCTCCGACACTCCCAACCCAACTCCCACCCCGGAGACCGCCTCCCTTCTGGCCGACGAGACCACCTCCCTCCTCAATGAGCAGGACTGTCTGCCCCACAACCTGTCAGAGACCagcatataacacacacacagacaatatgTGCGTATACACACAACCAAGGACTGAGGAGACTGTGGGTGGGAGCGAAcatccatatacacacacacaccctgatgtTGAACAGCAGGgtccagagagacagagcacCACACACATTCTGTACAGGTAACTGAAAcagtaatggaaacacttgagtaaatgagagaTACAGGTGTAGATCCTGAGTTAAATAAGCAATTAAAATCCCATCaagcttagggtcatgtataaaaatgctgggcaggccattattttggctaccatggctatgcccccataggggGACAatcccccatccacagggcacgagttgTCACTGAATTATTTGCttagcatgaaaacaatgtaaaccatatgccatggccttCTCAGTCACCAggtctcaacccaattgaacacttctgGGAAATTCTGGAGCGGTCCCTGAGActgcgttttccaccaccatcaatgCTAAATGATGGGATTTCTTGTAGAAGAATGGTCTCACATCCCACCaacagagttccagacacttgtagaatctaagcggttctggctcgtggtggccaaATGACCTATTAAGCCACTTTGTTTggatttcctttattttggcagttacgtTTATGTACATGTtcaaaaacacacagacatacacacatccTAACTGGAAAAAATTATAGTTGTTTCAACTAATTATAATTAAGAAACTGGTTccacactttttttttgtttactcaACTATTTGATCAGTGTTACCTGAACTTGAACCAATCTTGGCTTCAACTTGAGAACTTTCAGTCAACTTAAAATGTTGTGGAACTAGTTACACACAGACGGTGCTTTCTACATTCAATAATTTCAACGTACACGTTTAACACAAAGTACatgatcatttctacagtaattattattcacctgggatttgaactcacaaccacTTGGTTCAAGGCATACTGAGCTTCCTGCTGcaccaccatgtctgtgtcaatgacagattttttttattgctACACTTTGCACTTCAAAGTAAATGTCAGATCTGTCAAAAGTATAGTCGAATTAACTGAGAATTGATACAGACATGGTGACATAGCAGGACGATTGGCATGCCGTGAACCAAAAGATATGGTGCAtaatcactgtataaatgaccacGCAAAGTAataatgtacactgagtgtacaaacattagcaacaccttcctaatattgagttgcacccccttttgatctcagaaaagcctcaatttgtcagggcatggactctacaaggtatttgtatttattatgatcCACATTAGCTGATGCCaaggcaaaattaaggcagttatatcaTTTTGTATAAaaatacattcattacagaattcacaacatactaagtgtgtgccctcaggcccatactccactgTCAT

Function

NR:

description
metal transporter CNNM4-like

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606629.2 True 3685 mRNA 0.48 7 45915772 45954751

Neighbor

gene id symbol gene type direction distance location
LOC100136024 LOC100136024 coding downstream 8613 45904051 ~ 45907159 (-)
LOC110526037 LOC106584895 coding downstream 52531 45851230 ~ 45863241 (-)
LOC118965028 NA coding downstream 140844 45765669 ~ 45774928 (-)
LOC110526035 LOC105889509 coding downstream 172677 45655985 ~ 45743095 (-)
kremen1 kremen1 coding downstream 362398 45437334 ~ 45553374 (-)
LOC110526039 NA coding upstream 19022 45973773 ~ 45995386 (-)
apba1a apba1 coding upstream 308370 46263121 ~ 46360886 (-)
LOC110526044 LOC107699739 coding upstream 412950 46367701 ~ 46430607 (-)
rnf215 rnf215 coding upstream 506612 46461363 ~ 46471132 (-)
LOC110526055 samd3 coding upstream 1021644 46971364 ~ 46980777 (-)
G513169 NA non-coding downstream 109806 45805734 ~ 45805966 (-)
G513163 NA non-coding downstream 116043 45799460 ~ 45799729 (-)
G513161 NA non-coding downstream 118360 45797178 ~ 45797412 (-)
G513159 NA non-coding downstream 119628 45795802 ~ 45796144 (-)
G513123 NA non-coding downstream 162877 45752667 ~ 45752895 (-)
G513925 NA non-coding upstream 183407 46138158 ~ 46140055 (-)
G513940 NA non-coding upstream 211839 46166590 ~ 46166796 (-)
G513941 NA non-coding upstream 213031 46167782 ~ 46167986 (-)
G513942 NA non-coding upstream 214039 46168790 ~ 46169001 (-)
G513943 NA non-coding upstream 214565 46169316 ~ 46169528 (-)
znrf3 LOC106584905 other downstream 639385 45270568 ~ 45384850 (-)
nf2a nf2 other downstream 1703949 44209338 ~ 44272386 (-)
prodhb LOC100194675 other downstream 1967383 43940790 ~ 43955257 (-)
G510310 NA other downstream 2391664 43523714 ~ 43524108 (-)
G509952 NA other downstream 2790385 43124581 ~ 43125387 (-)
G514434 NA other upstream 955907 46910658 ~ 46910950 (-)
G514777 NA other upstream 1061411 47016162 ~ 47016496 (-)
G515094 LOC106585477 other upstream 2020042 47974793 ~ 47976975 (-)

Expression


Co-expression Network