LOC118964878 (LOC106585477)


Basic Information

Item Value
gene id LOC118964878
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47507163 ~ 47511010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980273.1
tggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCAATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGCATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtgcaggatgccgccaaaaatccactcgcaggacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCGAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTAGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGTTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCGCCGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaagacacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGGTCTTCACAGAAGAGAACCTTCTCTCTAGCCGGCACACTCTATGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTAGCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCGGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtCAGTTATCAAAAGTGGAGAATAAATCCTTAACCGTTGTCAGTTCATCTGATGAGTCCCTAGAGGCTTGTTGGTTTGTTGATGGTGTcctatcaaagcttgatgactatactatttcccagtcaccctcacccaatgaagacttgagcgtgagtactcaatattctcaactgagctcagaagagagtgtcagaatCACAGAGTCCTCAACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTTCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATGGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTCGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGACTCTAAAATGCCAGAGATTTCTACAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACCCCTGCATTGTAACAGTCCAATGACTGACAGCAGCCGACCACCGAGTGCTAAAGTCTCTTTTCGATCCTCAACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGTATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTAcattcccactgcagtacttgatggactccagcaaagatgatggcatctgttttgtcaccatactggtgataaggttgctatcggagatcagaccctcagccctagatggaccctcccaacaggcagcagatctgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgTATCTAGATTATCCAGGACACAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCTGCTATGTCCTCCCAAGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacggagaggggggctgagcagaaagcaagaaggagcttcctttg

Function

NR:

description
uncharacterized protein LOC110518659

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980273.1 True 3330 mRNA 0.50 3 47507163 47511010

Neighbor

gene id symbol gene type direction distance location
LOC118965030 NA coding downstream 153274 47351711 ~ 47353889 (-)
LOC118965029 NA coding downstream 158151 47346834 ~ 47349012 (-)
utp15 utp15 coding downstream 450358 47045493 ~ 47056805 (-)
LOC110526055 samd3 coding downstream 526386 46971364 ~ 46980777 (-)
rnf215 rnf215 coding downstream 1036031 46461363 ~ 46471132 (-)
LOC118964883 LOC106585477 coding upstream 22806 47533816 ~ 47534526 (-)
LOC118964884 LOC106585477 coding upstream 154804 47665814 ~ 47667571 (-)
LOC118964882 NA coding upstream 177641 47688651 ~ 47689252 (-)
LOC118964890 NA coding upstream 422528 47933538 ~ 47934317 (-)
LOC110513487 LOC106585477 coding upstream 437305 47948315 ~ 47975648 (-)
G515028 NA non-coding downstream 18446 47479347 ~ 47488717 (-)
G515001 NA non-coding downstream 84579 47422084 ~ 47422584 (-)
G514974 NA non-coding downstream 154894 47347090 ~ 47352269 (-)
G514949 NA non-coding downstream 209507 47297445 ~ 47297656 (-)
G514945 NA non-coding downstream 214302 47292620 ~ 47292861 (-)
G515039 NA non-coding upstream 145439 47656449 ~ 47656937 (-)
G515045 NA non-coding upstream 165697 47676707 ~ 47677109 (-)
G515046 NA non-coding upstream 178344 47689354 ~ 47690063 (-)
G515047 NA non-coding upstream 183051 47694061 ~ 47694292 (-)
G514777 NA other downstream 490667 47016162 ~ 47016496 (-)
G514434 NA other downstream 596213 46910658 ~ 46910950 (-)
LOC110526044 LOC107699739 other downstream 1076803 46367701 ~ 46430607 (-)
apba1a apba1 other downstream 1146277 46263121 ~ 46360886 (-)
znrf3 LOC106584905 other downstream 2230776 45270568 ~ 45384850 (-)
G515094 LOC106585477 other upstream 463783 47974793 ~ 47976975 (-)
G515122 LOC106585477 other upstream 752983 48263993 ~ 48264977 (-)
LOC110512142 LOC106585477 other upstream 781836 48292846 ~ 48318495 (-)
G515139 LOC106585477 other upstream 808737 48319747 ~ 48320588 (-)
LOC118964892 LOC106585477 other upstream 864936 48375946 ~ 48387076 (-)

Expression


Co-expression Network