G515139 (LOC106585477)


Basic Information

Item Value
gene id G515139
gene name LOC106585477
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48319747 ~ 48320588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584351
CTTAGGCggtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtgcaggatgccgccaaaaatCCACTCACAGGACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACCCCACCTCCTCTAGCTCCTCCGAGTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGC

Function

NR:

description
uncharacterized protein LOC110525122

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584351 True 432 TUCP 0.56 2 48319747 48320588

Neighbor

gene id symbol gene type direction distance location
LOC110512142 LOC106585477 coding downstream 1252 48292846 ~ 48318495 (-)
LOC118965031 LOC106585477 coding downstream 301893 48016304 ~ 48017854 (-)
LOC110511762 NA coding downstream 334096 47943033 ~ 47985651 (-)
LOC110513487 LOC106585477 coding downstream 344099 47948315 ~ 47975648 (-)
LOC118964890 NA coding downstream 385430 47933538 ~ 47934317 (-)
LOC118965032 LOC106585477 coding upstream 26276 48346864 ~ 48348019 (-)
LOC118964894 NA coding upstream 28121 48348709 ~ 48353264 (-)
LOC118964892 LOC106585477 coding upstream 57797 48375946 ~ 48387076 (-)
rab14 LOC106587009 coding upstream 215097 48535685 ~ 48540886 (-)
c5 c5 coding upstream 231032 48551620 ~ 48625435 (-)
G515128 LOC106585477 non-coding downstream 29061 48290169 ~ 48290686 (-)
G515121 NA non-coding downstream 33369 48258331 ~ 48286378 (-)
G515123 NA non-coding downstream 53639 48265170 ~ 48266108 (-)
G515104 NA non-coding downstream 322681 47996809 ~ 47997066 (-)
G515103 NA non-coding downstream 324940 47994489 ~ 47994807 (-)
G515141 NA non-coding upstream 465 48321053 ~ 48321460 (-)
G515144 NA non-coding upstream 3964 48324552 ~ 48324889 (-)
G515145 NA non-coding upstream 4873 48325461 ~ 48326114 (-)
G515507 cntrl non-coding upstream 92714 48413302 ~ 48420975 (-)
G515583 cntrl non-coding upstream 168086 48488674 ~ 48490587 (-)
G515122 LOC106585477 other downstream 54770 48263993 ~ 48264977 (-)
G515094 LOC106585477 other downstream 342772 47974793 ~ 47976975 (-)
G514777 NA other downstream 1303251 47016162 ~ 47016496 (-)
G514434 NA other downstream 1408797 46910658 ~ 46910950 (-)
prdm12b LOC106587007 other upstream 306450 48625747 ~ 48630388 (-)
LOC110512258 LOC106585521 other upstream 996456 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 other upstream 1026882 49346858 ~ 49349193 (-)
LOC118936342 LOC106585521 other upstream 1059234 49379716 ~ 49385907 (-)

Expression


Co-expression Network