LOC110511762


Basic Information

Item Value
gene id LOC110511762
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47943033 ~ 47985651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052133.1
aacacattcaagaacctccagaagctaactagGTAATTAGCTAAAAGCTATTTAGTCATAGTTAGCcaatgctagcggcttttaccttctgcacagataccagccctgttcttagcctggataatactcgccagtctactagtatcggactgtctctccacaacaacgccggattcctgccgtaatccctggaccactacttctgatcttcacagctagatcACAGCTTGCAGCTAACtagctcacagctagcttgcacttaTCGTGGcatccagtaccgaagctatccctgaggcccacctcccggcctactcagctgttctcccgaaccccactcatacacggctagagcccaatactccacctgatccttgctgtaaactatggaccttggcaccggttcatcgctgctaccgattggctatagtggaTCTATAGTGgataacgccactgccacgaaggtagcaccagttagccgtgagccaggcgcatctccctgcTAGCATTCTAAATTCTACCTGCCCCccaccgcaccaccacgactggtctgccgacgaatactccatccgctgtgccttcaaccggcctccgtcggagggctactaactttaaacgctgtgtagCCCGCGTGCTAGCGTAATGGCGGCTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTattatcacttggctacatagctgatgcctgctggactgtcgattaatcacgCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCAGACATCAGCAGTGCCACTgcattcccactgcagtacttgatggactccagcaaagataatggcatctgttttgtcaccatactGGTGATAAGGTTTCTATCGGAGATCAGACCTTCAGCCCTAGATGGACCATCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACTagtcctgtctgagttctgtCTGCATCCAGATTCTCCAGGACATAGGCATATTCCCAGAACCTGAACATCCAAAGGGTTCAGAGGTGTACATAAAAAACTCATGGAGGAGTTTGGCTCTTATGAAACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaaagcatgaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagtatagcagggagttagcatttgttttttgttccagttaggtgctgatgttattgatgtggCTATGATAGGACATAtacattaaatgttttattcatcactaaattgttgccttggattcagaagtgttccatttatttattctctgtacCATTTTCTTTACCTTTCATCTGTTAGCGTTCCAAGAGAGCAAACAAAAAGGACTGTCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAAGTCGTGGAGAACATGAAGGATGAAACAGAGACACACGAGACCAACaagaacaggacaggaggcaagAGTCTTCTCAGACACCCGGGTGTGGTTTCCGGGAAAGGGGATCTATCATTgagcagctggagaaggaggctcagaggactctaatgccttctctcaagattgggacatgctgtgccccaatactcctctccttcctgaggagtCTAACTGATGAGCAAGTCCCATGTTTTTTTCCAACCTCACATACAACAACTCTGAATTTATAGTCATAGTGCACCTTCTAACCACAAATGGGATTTCAAACACTACACTTAACCCTAACATCACTGTAACCACACACCTAACTCTTCCTGTAAATCAAGAACAAAAtatctcatggacttgctaattgcttaaataaatacatgtttattttccctgacatggctatctagtgactccactaactcaacaccagtgtgcaggtaaaatatgtttcctttcttttcttttctctagccaat
>TU584281
CTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTattatcacttggctacatagctgatgcctgctggactgtcgattaatcacgcgttccaagagagcaaacaaaaaggactgccattcagtccaggaacagactgagattccctctactgatggacattgcatagttggagaggtttctccctccatatctcagtCTGTCAAAAAACAATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGC

Function

NR:

description
uncharacterized protein LOC110525531

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052133.1 False 2097 mRNA 0.47 4 47975960 47985651
TU584281 True 250 lncRNA 0.46 3 47943033 47985005

Neighbor

gene id symbol gene type direction distance location
LOC110513487 LOC106585477 coding downstream 312 47948315 ~ 47975648 (-)
LOC118964890 NA coding downstream 41643 47933538 ~ 47934317 (-)
LOC118964882 NA coding downstream 286708 47688651 ~ 47689252 (-)
LOC118964884 LOC106585477 coding downstream 309436 47665814 ~ 47667571 (-)
LOC118964883 LOC106585477 coding downstream 441434 47533816 ~ 47534526 (-)
LOC118965031 LOC106585477 coding upstream 30653 48016304 ~ 48017854 (-)
LOC110512142 LOC106585477 coding upstream 311866 48292846 ~ 48318495 (-)
LOC118965032 LOC106585477 coding upstream 361213 48346864 ~ 48348019 (-)
LOC118964894 NA coding upstream 363058 48348709 ~ 48353264 (-)
LOC118964892 LOC106585477 coding upstream 392734 48375946 ~ 48387076 (-)
G515067 NA non-coding downstream 32960 47942749 ~ 47943000 (-)
G515064 NA non-coding downstream 249710 47726033 ~ 47726250 (-)
G515060 NA non-coding downstream 254471 47721224 ~ 47721489 (-)
G515058 NA non-coding downstream 259112 47716037 ~ 47716848 (-)
G515049 NA non-coding downstream 273431 47702308 ~ 47702529 (-)
G515099 NA non-coding upstream 1483 47987134 ~ 47987356 (-)
G515103 NA non-coding upstream 8838 47994489 ~ 47994807 (-)
G515104 NA non-coding upstream 11158 47996809 ~ 47997066 (-)
G515121 NA non-coding upstream 272680 48258331 ~ 48286378 (-)
G515123 NA non-coding upstream 279519 48265170 ~ 48266108 (-)
G514777 NA other downstream 959464 47016162 ~ 47016496 (-)
G514434 NA other downstream 1065010 46910658 ~ 46910950 (-)
LOC110526044 LOC107699739 other downstream 1545600 46367701 ~ 46430607 (-)
apba1a apba1 other downstream 1615074 46263121 ~ 46360886 (-)
znrf3 LOC106584905 other downstream 2699573 45270568 ~ 45384850 (-)
G515122 LOC106585477 other upstream 278342 48263993 ~ 48264977 (-)
G515139 LOC106585477 other upstream 334096 48319747 ~ 48320588 (-)
prdm12b LOC106587007 other upstream 641387 48625747 ~ 48630388 (-)
LOC118964878 LOC106585477 coding downstream 432023 47507163 ~ 47511010 (-)

Expression


Co-expression Network