rab14 (LOC106587009)


Basic Information

Item Value
gene id rab14
gene name LOC106587009
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48535685 ~ 48540886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606685.2
AGGATTGGCCACTAGCCTAGCTTAACTTCTTTCAGAGTGAAGTAACTGGCAGCTTTTTAAACtgtattttcagagtagcttccccaacagtGTCATTTATACACATCATCACATAATTTACACATCATTGGAAAAACCCCATGGGGAAAAAATGATCACTTCCATATCGGTGCAGCATTAGCTGAGTGTACTCCTGTCCAGTAGGTTGCGGTATACAGCTGAACTTGGTTGCGCTAGCTGTTATTGATGAAGAATTGTGAAAGCCTCTTAAAAGACCGATTTATCAGATCGCCGGGTTAGACTGCTAGATAAGTATTCAAATACAAGAGCCGAAATGACTACTGCTCCATACAACTACTCCTACATCTTCAAATACATTATTATTGGGGATATGGGTGTAGGGAAATCATGTCTGCTTCACCAGTTCACAGAAAAGAAATTCATGGCAGACTGCCCCCACACTATTGGAGTCGAGTTTGGCACAAGGATAATCGAGGTGAGCGGCCAGAAGATCAAACTGCAGATCTGGGACACTGCGGGACAGGAGCGCTTTAGGGCCGTCACACGCAGCTACTACAGGGGAGCAGCAGGGGCACTCATGGTCTATGACatcaccagGAGAAGCACATACAACCACCTTAGCAGCTGGCTGACTGATGCTAGAAACCTCACCAACCCTAATACTGTGATCATTCTTATTGGAAACAAGGCAGACTTGGAGGCCCAGCGAGATGTAACCTATGAGGAGGCTAAGCAGTTTGCTGAGGAGAATGGTCTATTGTTCCTAGAGGCTAGTGCAAAGACGGGTGAGAATGTGGAGGACGCGTTCCTGGAGGCAGCCAAGAAGATCTACCAGAACATTCAGGACGGAAGCCTGGACCTGAACGCCGCCGAGTCTGGTGTCCAGCACAAGCCCTCCGCCCCGCAGGGTGGACGGCTGACCAGTGAACCGCAGCCTCAGAAGGAAAGCTGCAGCTGCTAATGACCCCACCCACTGACCCTTCAGCTGACCTTTGCCCCCTGTGCCACAGCCTCCCTCTACCACCCAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0032880 regulation of protein localization biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045176 apical protein localization biological_process
GO:0007589 body fluid secretion biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0032456 endocytic recycling biological_process
GO:0009790 embryo development biological_process
GO:0030670 phagocytic vesicle membrane cellular_component
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005770 late endosome cellular_component
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005829 cytosol cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0055037 recycling endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0097208 alveolar lamellar body cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function

KEGG:

id description
K07881 RAB14; Ras-related protein Rab-14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606685.2 True 1049 mRNA 0.49 8 48535685 48540886

Neighbor

gene id symbol gene type direction distance location
LOC118964892 LOC106585477 coding downstream 148609 48375946 ~ 48387076 (-)
LOC118964894 NA coding downstream 182421 48348709 ~ 48353264 (-)
LOC118965032 LOC106585477 coding downstream 187666 48346864 ~ 48348019 (-)
LOC110512142 LOC106585477 coding downstream 217190 48292846 ~ 48318495 (-)
LOC118965031 LOC106585477 coding downstream 517831 48016304 ~ 48017854 (-)
c5 c5 coding upstream 10734 48551620 ~ 48625435 (-)
prdm12b LOC106587007 coding upstream 84861 48625747 ~ 48630388 (-)
LOC110526076 LOC106587004 coding upstream 131589 48672475 ~ 48750372 (-)
surf4l LOC106587003 coding upstream 358458 48899344 ~ 48944876 (-)
LOC110526068 LOC106586971 coding upstream 654302 49195188 ~ 49220181 (-)
G515583 cntrl non-coding downstream 45098 48488674 ~ 48490587 (-)
G515507 cntrl non-coding downstream 114710 48413302 ~ 48420975 (-)
G515145 NA non-coding downstream 209571 48325461 ~ 48326114 (-)
G515144 NA non-coding downstream 210796 48324552 ~ 48324889 (-)
G515141 NA non-coding downstream 214225 48321053 ~ 48321460 (-)
G515633 NA non-coding upstream 69556 48610442 ~ 48616313 (-)
G515703 NA non-coding upstream 211493 48752379 ~ 48766984 (-)
G515772 NA non-coding upstream 331105 48871991 ~ 48872300 (-)
G515782 NA non-coding upstream 350048 48890934 ~ 48891735 (-)
G515783 NA non-coding upstream 351843 48892729 ~ 48892931 (-)
G515139 LOC106585477 other downstream 215097 48319747 ~ 48320588 (-)
G515122 LOC106585477 other downstream 270708 48263993 ~ 48264977 (-)
G515094 LOC106585477 other downstream 558710 47974793 ~ 47976975 (-)
LOC110512258 LOC106585521 other upstream 776158 49316279 ~ 49320412 (-)
LOC110512256 LOC106585521 other upstream 806584 49346858 ~ 49349193 (-)
LOC118936342 LOC106585521 other upstream 838936 49379716 ~ 49385907 (-)
G516320 LOC106585521 other upstream 994329 49535215 ~ 49536285 (-)

Expression


Co-expression Network