LOC118965029


Basic Information

Item Value
gene id LOC118965029
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47346834 ~ 47349012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981752.1
TGTTGTGTGCTTCATGGACGACATCCTCGTGTCAGCACCAAACATTGCAGAGCACCTTGTAGTGCTGGACAAAGTGATGTCAAGACTGGAGAAATACGGAGTGAGAATGAAACGCAGCAAGTGTGAGTTCCTCCAGGACTCAGTGGAGTATCTCGGATACAAGATTGATGCACAAGGCCTGCACCCAACCAACAGCAAGGTGGAAGCAATCGTAAACGCACCAGCACCCACAAATATCTCAGAGCTGAGGTCATTTTTGGGGCTCCTGAACTATTACGGAAAGTTTGTGGCAAACTTGTCCACATTGTTGCATCCGCTTCACCAACTGCTGCAGGCCGATACAAAGTGGAATTGGTCCCCACAATGCGAAGAAGCATTCAAGATGTGCAAACAGCGTCTGCTAAAGAGCAAGTGGCTTGCCCACTATAACACAGAGATGAAGCTGAGACTCGCTTGTGATGCATCTCCATACGGAGTAGGAGCCGTCATCTCACATGTTCTACCGCCAGGTGAAGAACACCCTATTGCATTTGCATCACGGACTCTGTCACCAAGTGAGAAAAATTATGCTCAAATTGAGAAGGAAGCCCTGAGCATAATATTTGGAGTGAAGAAGTTTCACAAATACCTCTACGGAAGGAAGTTCCAACTGCTGACAGATCACAAGCCTCTGTTGGCCATCCTTGGACCAAAATCAGCTATACCAACCCTTGCTGCACTTCGAATGCAACGTTGGGCTCTGATATTGTTAGCCTACGACTACGAGATTGAGTACAGACGATCCAGTGATCACGCAAATGCCGATGCACTATCAAGACTACCATGCAATAGTGACTCCGACAGTGAAGATGATAGAGCAGCCTTCCAGATCTCTCTCATTGATGAACTGCCCATATCTGCTTCTGACATAGCAGAGGAAACAAGGAAAGACCCAGTGCTTTCCAAAGTCTTGGACTTAACATTAGGCGGTTGGCCAACCTTCGTAAATTACGATAACCTTCGTCCATTCATCGACAAGAAAGACCAGTTGTCCACTGATCAAGGGTGTGTTCTGTGGGGATCAAGGGTGGTGGTACTTCACAAATTCCAGAGGAGACTGCTATCTGACCTGCATGAGGGACATCCAGGGATCACTCGAATGAAAGCACTCGCTCGCAGTTATCTGTGGTGGCCTGGACTGGATCAGGACATTCAACAGCATGTAGGCCACTGCTCACCTTGTGAAGCTGTTCGCAacaagcctgctgctgcaccTCTTCATCCATGGTCCTGGGCTGCTACACCTTGGGAACGCATCCATGTGGATTACGCCGAAATTGACAAGCAACATTTCCTTGTTGTCGTCGATGTCCATTCCAAGTGGATGGAAGTGTTCCCTACTCAACTGACCACAGCTGAGAAGACCATCAATCTTCTCAGACACCTGTTTGCATCCTTTGGACTAGTCAAGGAGCTCGTATCGGACAATGGCCCCCCGTTCACGTCAAACGATTTTGAAATGTTTCTCAAGAACAACGGAGTAAGGCACATCCTGTCACCACCTTACCATCCGGCATCAAACGGAGCAGCGGAGAGAGCCGTGCAAACCTTTAAGAAGGCCTGGACTAGACTCGAGGTTCAGTCTGTGCCCATCCACCAAAGGCTTCCCCGGTTCCTGTTTACTTACCGTAACACCCCACACACAGTAACGGAATGTACACCAGCTGAACTGTTTCTGAAACGCCAACCACGTACCCGCCTGACATTGTTGAAACCAGACTTGTCAAGCACTGTGGCAAAGCACCAGCTACAGCAGAAGAAAGCTCATGACAGACACTCAAAGACTGTCAGAGAAttcaaagaggaagagagggtgatgGTACGTGATTTCAGACACCCCAAGCGCCTGTGGAACTCAGGTGTGATCTTGCAACGCAGAGGACCTTTAACTTACCAAGTCCAAATTGGTCATCGCCAGGTCAACGTTCATGTGGATCATCTGCTACGGTCCAACGCCCCAGCAAAGACATGCCGAGAGAACAAGAACAATAACGACCCCCAGGACTATTCTCCTGACTGTGGATGTACGGGAGAGACAGAGCCTGACCTTCCACCCGaacctggcccaccacaggaaGCCCAAGAGGAGCGGAGATATCCTATTCGTCAGCGAAGGGCACCTCAAAAGCTTGACCTGTGA

Function

NR:

description
PREDICTED: uncharacterized protein K02A2.6-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981752.1 True 2179 mRNA 0.49 1 47346834 47349012

Neighbor

gene id symbol gene type direction distance location
utp15 utp15 coding downstream 290029 47045493 ~ 47056805 (-)
LOC110526055 samd3 coding downstream 366057 46971364 ~ 46980777 (-)
rnf215 rnf215 coding downstream 875702 46461363 ~ 46471132 (-)
LOC110526044 LOC107699739 coding downstream 916227 46367701 ~ 46430607 (-)
apba1a apba1 coding downstream 986852 46263121 ~ 46360886 (-)
LOC118965030 NA coding upstream 2699 47351711 ~ 47353889 (-)
LOC118964878 LOC106585477 coding upstream 158151 47507163 ~ 47511010 (-)
LOC118964883 LOC106585477 coding upstream 184804 47533816 ~ 47534526 (-)
LOC118964884 LOC106585477 coding upstream 316802 47665814 ~ 47667571 (-)
LOC118964882 NA coding upstream 339639 47688651 ~ 47689252 (-)
G514949 NA non-coding downstream 49178 47297445 ~ 47297656 (-)
G514945 NA non-coding downstream 53973 47292620 ~ 47292861 (-)
G514942 NA non-coding downstream 56490 47289965 ~ 47290344 (-)
G514941 NA non-coding downstream 56960 47289666 ~ 47289874 (-)
G514937 NA non-coding downstream 62415 47281565 ~ 47284419 (-)
G515001 NA non-coding upstream 73072 47422084 ~ 47422584 (-)
G515028 NA non-coding upstream 130335 47479347 ~ 47488717 (-)
G515039 NA non-coding upstream 307437 47656449 ~ 47656937 (-)
G515045 NA non-coding upstream 327695 47676707 ~ 47677109 (-)
G514777 NA other downstream 330338 47016162 ~ 47016496 (-)
G514434 NA other downstream 435884 46910658 ~ 46910950 (-)
znrf3 LOC106584905 other downstream 2070447 45270568 ~ 45384850 (-)
G515094 LOC106585477 other upstream 625781 47974793 ~ 47976975 (-)
G515122 LOC106585477 other upstream 914981 48263993 ~ 48264977 (-)
LOC110512142 LOC106585477 other upstream 943834 48292846 ~ 48318495 (-)
G515139 LOC106585477 other upstream 970735 48319747 ~ 48320588 (-)
LOC118964892 LOC106585477 other upstream 1026934 48375946 ~ 48387076 (-)

Expression


Co-expression Network