XLOC_024237


Basic Information

Item Value
gene id XLOC_024237
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33605601 ~ 33609953 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049061
ATGCACTGTGTTCTAAAACACTCTCCAGAGAccagatataattatatttaatacatactattttaatataatataattacattaggaataaacaataatgtacattatattataatcgcCAATCATGGCACTAAAGACTAGAGATGAAACATTCACTTTGAGGAGGTTTGCTTTCTTTATGcttaatgaaaacactgacagaactaCTATAGAATAACTGATTGTAAACCAATATAATCCTCGCTGAAAAAACACCacctacaattaaaatttgatcagagagTTAAACTCaccagaaaaataatgaaaggggGATGGATATGATAACATTCAGAGTTACCAAAGTTTTTATGGGTCAAAAGATCTAAGAATCTGTGAGTCACACCATAAAATGACAACCGTTAAGCAGAGAACACCAAAAGGGTGAAATGATTTCTGCCAACAGATCTGACTGTTAATGAGAGCAAaatcattgattgattcagAAAAATGTCCCCAGCGGAACTGGGAGATAATGCTCAGAATACAGCAGACTGTATAAACAGGTGTTACACACTCACAGATCTGACCAGCAACATCATGTTGCTTCCAGAATTAATATTGCAAAatgatgcattaacattaattccacatgattgaatttgaaactgatgaaaattctaaaataaCTATGGTTCTTCTCTGCTTTTGTTCTCACCTTAGGCGGACGAATAACAAAGAACACTCAAGATCCGGTCcacatcaaacaaatacaaatgagggCGACAAAAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGGTGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGATGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAAGCTATGAAGGCCTGTATGGACTGAATGAGCAGTGCATTCGGGTCAGGCTCATCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTGAACACGACTTACAACTGATAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCGACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattacaaatattctgatatctttgacaattcaaaacatgagctgaaaacagagactggtgacttcacaacccaccagggaggaatgcgggaaaaaccagttcctgctgcatttgcatctgactatgctgagactcagcttcatccccccaagtcacacatatggtcatttcaatgtttcaatgttttagactaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatacataacttcaggcatcttttgaaccactgtgaggggtgtgacttttacactaagtgtgaatgccttctttgttattcacacccccttccttgagggaattcttggattatttaaggcaaggtttgagaaaaactcagggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggaatgcatctttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgtaatgtttgaccatattttgctcactctgtaattattaattcaagtagattacgctgtatccttgtttccgcacgtcttgcgtcaggtcagtagacggactaaaatccaattgagatggagcattggcacactaattgtgttttagggatccggctgactcttgatattgattcatgtgtacttaggtggaaagggcgataacttccgtctaggtcaacaaggtgttgcacgactaacctagattgggtacccgacctttgtttgaaggtaatattattctaaattaagttcatatgggaaaccatgggcttggtgaaaaccaaagttactatagagtccagtagtcgggtacatttatattaatgccctaacctctaattagaaatgatgattgtcttaactcaaaggtgtacacctaagcgggactaactaaagtattttagaacgagcgcgctggtagcggccatctaaagtattagtcaatttacctctgtttaatattcaagactgaccggagtgtgaccgtgagggacgccttcggccgaggcgatttctctgagcgacatgagcacccgaatgaacggatgtaatagttactagtgaagacaaacggttcaaacatttatctaaattacatattgatataatcttcttaatgtttcataattggagtcagataaaacgaggataaatatattaatattctaaaccacctcatactaaaattggagttagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccagtggacaccggcattgggccaactgggtggaccttacataAGCTTGCTTAAGAACCAATTCGGTTTTAGCTTACTCATATTGAGGTTTGAGCTTCCTCAAGAAGCAATTCGGTTTGAGCTTCTTGAAGAACCAATGAGGTTTAAACTTTGAGATTTGGGAGATTTTTCATGGGCGGACAGCAATCGTTTCACTCATTTCTCTAAGATTTTTGGAACAACATGTGAGCAAGTACATGACACCATATCCATTTAATCACTAACAATTTAACATCTGACAGTGACAGTTAGCAAACAGACAGAAACAATGGGGTAAAAATAAGATTTCCTTCAGCAAAGCAACTTCTTTTTAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0006396 RNA processing biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049061 True 2989 lncRNA 0.38 3 33605601 33609953

Neighbor

gene id symbol gene type direction distance location
XLOC_024236 NA coding upstream 102037 33501345 ~ 33503564 (+)
XLOC_024235 NA coding upstream 165981 33407120 ~ 33439620 (+)
XLOC_024234 NA coding upstream 256866 33344794 ~ 33348735 (+)
XLOC_024233 lactb coding upstream 339048 33256012 ~ 33266553 (+)
XLOC_024232 tpm1 coding upstream 355278 33192404 ~ 33250323 (+)
XLOC_024238 CABZ01071677.1 coding downstream 119331 33729284 ~ 33729398 (+)
XLOC_024239 CABZ01071679.1 coding downstream 170560 33780513 ~ 33780628 (+)
XLOC_024240 roraa coding downstream 239694 33849647 ~ 33969717 (+)
XLOC_024241 ice2 coding downstream 362066 33972019 ~ 34009675 (+)
XLOC_024242 anxa2a coding downstream 403140 34013093 ~ 34027440 (+)
XLOC_023973 CR762411.1 misc upstream 18387492 15217824 ~ 15218109 (+)
XLOC_024231 dre-mir-190a non-coding upstream 466401 33139075 ~ 33139200 (+)
XLOC_024229 NA non-coding upstream 569497 33029618 ~ 33036104 (+)
XLOC_024243 NA non-coding downstream 425550 34035503 ~ 34050402 (+)
XLOC_024244 NA non-coding downstream 444803 34054756 ~ 34138343 (+)
XLOC_024247 NA non-coding downstream 867985 34477938 ~ 34487808 (+)

Expression


Co-expression Network