XLOC_024240 (roraa)


Basic Information

Item Value
gene id XLOC_024240
gene name roraa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33849647 ~ 33969717 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048030
GAGTCACATGGATTCTGGTGTGGTCATGCGAGCGCAGCTGAGCGGCAGAGCTATGCTGGCCAGCTGCTGCTGAAACGCCAGTGGACTTGCACCGCGCTAGCACTCGCAGCACCCAGCGCCTATGGACCGCCGAGCTTAATGATGTATTTTGTGATTTCAGCTATGAAAGCTCAAATCGAAATAATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTATGGCGTGATAACGTGCGAGGGCTGCAAGGGCTTCTTCAGGAGGAGTCAGCAGAGCAATGCGGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATTGACCGCACCAGCCGGAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGTGACGCGGTGAAGTTTGGCCGAATGTCAAAGAAACAGCGGGACAGCCTGTATGCGGAAGTGCAGAAACACCggctacagcagcagcagcggGACCACCAGCAGCAGCCCGGTGAAGCCGAACCCCTTACCCCAACTTATGGCCTCTCCACCAATGGTCTGACCGAGCTCCACGATGATCTGAGTGGATACATGAATGGCCACACGCCGGATGGCACCAAGCCTGACTCAGGAGTCAGCAGCTTCTACCTGGACATCCAACCCTCACCTGATCAATCCGGCCTGGACATCAATGGCATCAAGCCAGAGCCCATCTGCGACTTTACCCCTGGCTCAGGCTTCTTCCCCTACTGCTCCTTCACCAATGGGGAGACGTCCCCCACCGTTTCCATGGCTGAGTTGGAACATCTGGCCCAGAACATTTCCAAGTCCCACATGGAGACGTGTCAGTACCTGAGAGAAGAACTTCAGCAGATGACCTGGCAGGCGTTCCTTCAGGAGGAGGTGGAGAACTACCAGAGCaagCCCAGGGAAGTCATGTGGCAGTTGTGTGCCATCAAAATCACAGAGGCCATTCAGTATGTGGTGGAGTTTGCCAAGCGCATCGACGGCTTCATGGAGCTCTGTCAGAATGATCAGATAGTGCTTCTCAAAGCAGGCTCTTTGGAGGTGGTGTTCGTCAGAATGTGCCGTGCCTTCGACCCTCAGAACAACACAGTCTATTTCGATGGAAAGTATGCCGGGCCTGATGTCTTTAAATCATTAGGCTGCGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTCTCTGAAGACGAGATCGCCCTGTTCTCCGCCTTCGTCTTGATGTCTGCCGACCGATCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTCCAGCAGAAGATCCAGCTGGCCCTCCAACATGTTCTGCAGAAAAACCACAGAGAGGACGGCATACTGACAAAGTTGATATGCAAAGTGTCCACGCTGCGAGCCCTGTGCAGCCGGCATACGGAAAAGCTGACGGCGTTCAAAGCAATATACCCAGACATTGTCCGCGCACATTTCCCCCCTTTGTACAAGGAGTTATTCGGATCGGACTTTGAGCAGTCGATGCCCGTTGACGGGTAGCATTTCCCTGCGCCCTGATGCCACACCGTGGGGAATGTCAAGCTTCAATCTGAGACACTTTAGCAgtgccctgcacacacacacacacatatgcacacacacctgGATGGAcgacacactgcacacacacacacacacttttcccccctaaccttttttttttttggccattttTTTTTCGTCAGGGAGATGATGATAATGGACTGGGTAGGACTCCAGCGGTTTATTTTTGGGGGTTTGTTCCCTCTTACTGACACAGGTGGGATTCGGAGCCCAGGGGAGAGGACGAGAAGAtgaagac
>TCONS_00048031
CTCAAATCGAAATAATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTATGGCGTGATAACGTGCGAGGGCTGCAAGGGCTTCTTCAGGAGGAGTCAGCAGAGCAATGCGGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATTGACCGCACCAGCCGGAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGTGACGCGGTGAAGTTTGGCCGAATGTCAAAGAAACAGCGGGACAGCCTGTATGCGGAAGTGCAGAAACACCggctacagcagcagcagcggGACCACCAGCAGCAGCCCGGTGAAGCCGAACCCCTTACCCCAACTTATGGCCTCTCCACCAATGGTCTGACCGAGCTCCACGATGATCTGAGTGGATACATGAATGGCCACACGCCGGATGGCACCAAGCCTGACTCAGGAGTCAGCAGCTTCTACCTGGACATCCAACCCTCACCTGATCAATCCGGCCTGGACATCAATGGCATCAAGCCAGAGCCCATCTGCGACTTTACCCCTGGCTCAGGCTTCTTCCCCTACTGCTCCTTCACCAATGGGGAGACGTCCCCCACCGTTTCCATGGCTGAGTTGGAACATCTGGCCCAGAACATTTCCAAGTCCCACATGGAGACGTGTCAGTACCTGAGAGAAGAACTTCAGCAGATGACCTGGCAGGCGTTCCTTCAGGAGGAGGTGGAGAACTACCAGAGCaagCCCAGGGAAGTCATGTGGCAGTTGTGTGCCATCAAAATCACAGAGGCCATTCAGTATGTGGTGGAGTTTGCCAAGCGCATCGACGGCTTCATGGAGCTCTGTCAGAATGATCAGATAGTGCTTCTCAAAGCAGGCTCTTTGGAGGTGGTGTTCGTCAGAATGTGCCGTGCCTTCGACCCTCAGAACAACACAGTCTATTTCGATGGAAAGTATGCCGGGCCTGATGTCTTTAAATCATTAGGCTGCGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTCTCTGAAGACGAGATCGCCCTGTTCTCCGCCTTCGTCTTGATGTCTGCCGACCGATCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTCCAGCAGAAGATCCAGCTGGCCCTCCAACATGTTCTGCAGAAAAACCACAGAGAGGACGGCATACTGACAAAGTTGATATGCAAAGTGTCCACGCTGCGAGCCCTGTGCAGCCGGCATACGGAAAAGCTGACGGCGTTCAAAGCAATATACCCAGACATTGTCCGCGCACATTTCCCCCCTTTGTACAAGGAGTTATTCGGATCGGACTTTGAGCAGTCGATGCCCGTTGACGGGTAGCATTTCCCTGCGCCCTGATGCCACACCGTGGGGAATGTCAAGCTTCAATCTGAGACACTTTAGCAgtgccctgcacacacacacacacatatgcacacacacctgGATGGAcgacacactgcacacacacacacacacttttcccccctaaccttttttttttttggccattttTTTTTCGTCAGGGAGATGATGATAATGGACTGGGTAGGACTCCAGCGGTTTATTTTTGGGGGTTTGTTCCCTCTTACTGACACAGGTGGGATTCGGAGCCCAGGGGAGAGGACGAGAAGAtgaagacacttttttttttttttccttctctctctctctttctctctcgttcCTTTCCAGAGCCGTCCCGTGGCGATTTGTCACCATCAGCATAAATAGTTCTGACTCGTTTCCAAAACGATTCCCAGAGAGAGCACCTAAACTTTTCGCAGCCCCTTCCTCAAGCCACGAATGAAGTTGCGATAAAAAAAGCTGATTATCTGGACTGTTCCAGCAGTTATAGTAGCACCAAAACAAGTGTAGAAGCATATGTTGTGGTTTCTTCCTTCCCTTGGATTTTAGTTTTTGGGATGCGAAAcgaagaagagagagagagaaagagagatacaTAGAAGAAGACACCTCCGAACAGCACCTTTCTACGGACAATCGAggactaaaaaaacaacaacaacaaaaaaaagaaggaaCAACGTGTAGAATTCTGGTAATTCTAGTCGTAAAGCGTGCGATTGCTTTTAGCCGTCAGAGACTCCATCTATCATAGTTGCTTAGTGATATCGTTTAAGGCCATCTGCTATTAAGTCCCTCTCTGGAACGGTGTTTTATCGTAACGTAACGGTCTGACCACAAACATCGATGCAATGCAAAGGGTCCATTCCACCTGTTTTCTAACGTGTTACAGGGTATACGGTCATAAGTACAAACtatacagaagaagaaaaaaaaataatgtttatagaatctattttaaataacatgtatgATATTTAGTAGCTAGACTATTCTTAATTGTGAAAAATCGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTATAAATACCACGGTTCTGGAGAGTGATTGCTGGAAACCCAACGCTGCTGAGGGTGGGtgcgtgtttgcgtgtgtgtttgtgtatttatttgcgCGAGGCGGAGGTTGGTGCTGGGGAAAGGCGGGTCATGTGATCTGGGAGtgtataatcattttttttttggtcatttaaaCTGGAACTAAGCTCTAGTTCTTGTGAACCTAAGCACACGGGGTCTATTCAGTGAAATAAGACCCTTTTTTTTCTCCATACGTCATTTGCTGTTTAATGGTTCCCTCTAGTGGTGGTCCACCAGATCTGTTGGCTGATTTACTTAAACCGACTATTGTGAGGGTCTTTGCCCAGCAACAACGCTCGTCGGGAACGTAAGAGTgaggaaaaaatacaaaaagagaCATATTCAAAGCCTTGTCTGGTTGAAAATCCTCTATTTTTGTAACATTGTACAGTGCTTATGAAGCCTATGAGAgaaaaaagggaaagaaagaaGAATGATTTAGCACTTAATCCTGCAATAATTagaatatgtgtgtttttttaatgattttatttgtctttttcgaAGAACAAGACATTTGTAGTAATAGTGCTATTTTTCGGAAATACCTAACTGTTGTGTGTTGCGCGTGTTTGTACGTCTTTTGAATGTGCCATAGTGGTctttcctgctttttttttttttttgagtctaaATAACAAAAAGATTTGTTGTATTGTAACATTCCAGTAAAAAAACTACTTAGAAAATCCCACAATAATCCAGAAgaaggagaaaaataaacattattgatcCTCAACCTGCTTACAGACATTCTGACAAACATCCAGTATAGATCTTGGTAGCTTTTGTGTCATTCCCCCCATAATTTCCTCAGGGAAGAGTCTGTCTAACTCGATTCTGAAGCCGgtagctaaaaaaaaatgttagtcaGCTCTATGTTACATCTAAAGCTCAATAATTTGATCTTGATGGCCTGTTTAGAacaaataaatagcatttttaatATAAGTAAACCACATCACTAAACGATTAGTCAATGCATTCCATCATGAATGACAATCCAGGTTCATGTTTAGTTGTAAATCAGCAGTTTGTGCACTACACGGCTCAGGGAGAGAGATGCGGTGATGATTGAGAAAACTGATATAATGCGATCAGTTCCAAACCTAGTGAGCTGCCTACATAGCGAAAAATGTGTGTTCACTACTttattttgaccaaatttggcCGTATATTGCTGAAAAGCCATTCCAACATGGAGATATGAGATCAAAAGATATGATAATTATGAATTTACGCCATTCAGCAtcataaataatgacaaaatgctGTTAATAGTGCAATATTTACCCAACAATTGTGGGAAATTTGCTCAATACTTAACATAGCAGCATACTGATGTAAAAACTCCATTGAAATCAATTGAGAGAAGACACACCGTTTGGTAAATAGGTGCCGCCTACATGACATtgttaaacaaacatttataaaagtTGGGAAATAAAAGTGTTCCCCCTCActaatttatgtttaaattttAAGGCATGTGCTGTGTCATTCTTTTAGCATAGCAACATGCTAgtgtaaaattaaattgaaatcaaCTGTAAGAGAAAACAAACATGCTACATGGTATTTTTGTAGTGGACAGGGATGTTTTCTATGTACAATAGCCCAAGTAATAAGGTTTTGTTGCCTATCTAGACAGCAAAAATGTGTTGCCAGAATGGTGAGAATTAGTAAATATGTGCTACACTGATTTGCTTTTAAATTGTGTATtgcggtaaaaaaaaaatcttccaacATGGCGTGCTAATTACATCCTATTCTAtactaaaaaatgtttttaatttaattttatagttaATACTCACCCAAAGTTTATGCTTTGTGAAGCTTGTTAATGTATAATGTGTTTAGCATAGCAATGTTAACTTAATGAAGGTTATTAAAGTAGAATGTATTTAGCATAGCTACTTGCTAAcgtaaaaccagcctgatctcacgagaaaacgtaagtgttttacgttttgtcagttaagtagctaattcgtacgaaattatacgattttaaaaaggaggcgtggcatctaACAACCCCCATACCCCCCCTCCCTCCatccgtcattgggggatgagcaaatcgtactaaaatgtgcaaattagattgtacgaagtCATACGAATTACctgctaaattaaaaagttacgaattgccatgagattgtgttgcttAAAACACATTAGATATCAATTGTGAGACGAGACAAAACACATGTTGTGAATGTAGATTGATCTAAACCACTTCTGCTACGTTACATTATGCTGCCTATGTAGATAACATACAAGGCAGCTCACTAGGAACAGAACTGAACCAAAAAAAGAACCTGGTATTGTGTTAAAAGTACAAATCTGTCACTGTTCATTCTTTAATCCTCATTTTTCATCTTTGGCAATTTCGTGCTCATGTCGCACCCCGTTATTCACTAGCATGAGTGCTGTCAAGTCAAGGGAAGACAGTTGTACATCATAAACAATGCGAAATGTGTCATTTCATTTATTCCCCCCGTAGGCCACTGGATTTATCAAGTCACCCAAGATCTAATTCCCTATACTCAAACAAAGCAAGATACCAACCTCAAGCGTGCTACGCTAATTTACTTAGCTACAACGtgcgtttttttcttcttctctggaTTGGGATTTGTTTTAATTGTCGCTGATAATTGTTCGAGTCTATGTGCCAAATACCTCCTCACGATTTTGCTCCACCTTGAGACGTCCGTCGCTCGACAAATACGGGTTTCTACAGGGTAACCACTGCTGTGGAGTCCCCTTGATGAACAAGCTTTGCTGTCCAATGATCTTCATTCAGAACAACACCATAAAAGCTGTCACGTTTTGCCACTTTTTTTGCATGTCGTATTTTGTCAGTGTAATTTGTATTTGACGTTTTAAAGCAATATGCTATGAGAACTTTTTTGggacaaaaatttattttttctaaCACAAGGTACTTAAACAGCTCCGAATCTGTGGTATTTTTAGACGTGTAGAGGTGGAAGATCCATTTTCCCTCTGTCTTTATTGTAAATTCTTTATTATTTTCGTTAATTGTGGTCCCCTCTTTGTAAGAAGCAATATACATCCGTACGTGGATGCGAAAGCATATACAAGCGGAAGTCTGTGTGTTTTGTGATATTTGTAATGTCTGCTTAAGGTTAAACCCCCCAGACAAGGCTTTAAACGATCAGGCGCAGCAGGGTGAGATGGTGAACTGTATGTTAGATCTTACGTTACTTTCCcaggatttaaaatattttacgtAGCACTGAGCTTAAATCCGTTGACAAGGCTGTACTAGCATGACACACCGCACTTCGACGTTAACATTTCAATTAGATTTATGCAACAAGGCCTATGCACTCACGGACTTCGGCACAATTaccgtttttttcttcttctcgcaATTCTGATAAATGTGTCATGCTTGCTACAGCATTCGAGCTGAAGGTTACTAAGATTTACGTCACTCATTTTCCTtgcgttttttttctttcctaaaGCACAGCTGACGCGCGTTATTAAAAGTGAACTATGTTTAGATAATAGACGAAAAGAAAAGTCTTTTAGCCATAAACGAATGTCAAGCAATAATATATATGGTGTATTATGATTCATTTTGTGCATAGGCTTTGAACATCTGCATGTAAATACATTTTCTTATTTATCGCGTTTAATTTCTTTTTCCGCTTTGCATTTTTCAGTtcgttttagttttgtttgtatattgACTAGTTCTGTTCCCGGGTGGAGAACTACGAACGTCAAAAACGGCCTGTACAGCTACGTTTCCCTGTCCTCCTTTCGGCTTTTAATTCACGATATTTAATGTTCTATCGATCACATGTATAAAAGTAACTTTGTAACTTCTGTCTGTATAGGTAAGAAGAGAATACTGCTATTAAGACCTGCTCAGTGCGaaatatttatctgttttatcaGACACATCATGCTGTACAATATCTGTTTTGAGTATACTTCTCTCTTTTAGACTTAGTTCGATTAGCGGTAGGGTGTGCGGACATTAATTTTTGTGTTATACTGACGTGTGGTGCTAGGTAAGTTACTTTtgtgaacaaaaattatggattCATAGACTAGGCCACCCTCTTAGTCCATTCATTTCACTGAGTAttgatgcattattaatattaggactcgataaagaataataataataataataacgattatAATAACTATAATGATAAAGATTACGATAGTAGTAAATTTACTTTCGAATACCCAGCGAGTACCTGTATCAGTGTGCTAGTCTTGGGACACGGCTTGTTTCCTTCCCACTTTTAAGATTATTAGCAAGTATCGGCTAAGTTAAACgttgcagttttaaatttttgacAATTGTGCTTACAAAatggataatttaaaaaaaagcagcaGTATTGTGTTCGTTTTTGGGAGGCGTTTCTTATCCAGTGCTTATTTTTTGTATTGGACGCTGGAAGGACTTTAAACACGCGATTAACTAACGGATTGTCTGCCACTTTTTGGCTCcctccatatatattttttttcatacattcagttttgttttgtttttcattttcaaagtcacacttacacacactcacatggtTAAGTGTTAAAAACTGTACAGGACAAAAGCGGTTGTGCGAAGTTTTGTTGCGAAACTTCCTGTTTTTATCTTTGTAGCAAGGCAGAATCTACTTGCAATAATTCTTAGCAAACGACGCTGAGTGCCTCTCAGTGGTGCAGGATGCAGAAAATATATTCGTGCGTTATTGTTTTCACCGTTTTTTCGACCGTGTTTGCACTCGTAAGTGAATTCTGTCTGATGTTCCCGACTTTTATTTTTCGTATGTAAATGAGGCATTTCATGTTTGTTTATAGCCATGGAAACAACATTTATGGTCTCTGTGATGTCCTGACATTCTCTTTCCGTTTCCCTCCGAACAACTTCACATGGGACATTTCATCCAGTCGGTTGGGTGTATTTTGGATATTCGCAGAGACAAAATGGCGGACAATAGACAATCCACTCCGTGTTCTCCTTGTTGTTTCCTGCCGATTAGATTTTAAGTTGACGATTATGGAACAAAATGACTAATGCAATGTATTTTAAGTGTTCATATGTGTATGATGCATACTACACTTCTATTTCTCGTTGAGCTGAAGGGAAGGGCACAAGGGCTGGAGCGGGACGGGTTGCATTTTGCTCCTGCCAACATGCGGGGGGCGGGGGGAGGGGATAAAAAGCAGAAAACAGGTTTGCGGTTTGTCACATATTTTTACGTCACATGTTTGCTACTGATCTTAAAATGGGGACAGTCGATCATGTACCTTTTTATTCAGCTCTTTGGAACTCTCTTTAGGAGATAGTCTCTTCTCAATAGTGGTTTTGCTCCTTCCGTTTGTCTGATTCTTAAATATGGAAATAAGTATTTTGATTCATTTTGTAAATACCGCtgtaaagaaaaataagaaatttAATGTTGTCTTTTAAATACTTTTCATTCTAATATGAATGTTGTTATATTGTACTTAGAAACTGTACCTTTAATATTACCTTTATTAAAAGTGCATTGGACACATCGATTTTAGATGTGCTTTATGTGCTGTTATCCCATAATAAAATTTACCGCTTGTAATGG

Function

symbol description
roraa Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within cerebellum morphogenesis and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in brain and eye. Orthologous to human RORA (RAR related orphan receptor A).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048511 rhythmic process biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060306-2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within cerebellum morphogenesis and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in brain and eye. Orthologous to human RORA (RAR related orphan receptor A).

Ensembl:

ensembl_id ENSDARG00000031768

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048030 False 1846 mRNA 0.54 10 33849647 33963212
TCONS_00048031 True 8182 mRNA 0.40 9 33939728 33969717

Neighbor

gene id symbol gene type direction distance location
XLOC_024239 CABZ01071679.1 coding upstream 69019 33780513 ~ 33780628 (+)
XLOC_024238 CABZ01071677.1 coding upstream 120249 33729284 ~ 33729398 (+)
XLOC_024237 NA coding upstream 239694 33605601 ~ 33609953 (+)
XLOC_024236 NA coding upstream 346083 33501345 ~ 33503564 (+)
XLOC_024235 NA coding upstream 410027 33407120 ~ 33439620 (+)
XLOC_024241 ice2 coding downstream 2302 33972019 ~ 34009675 (+)
XLOC_024242 anxa2a coding downstream 43376 34013093 ~ 34027440 (+)
XLOC_024243 NA coding downstream 65786 34035503 ~ 34050402 (+)
XLOC_024244 NA coding downstream 85039 34054756 ~ 34138343 (+)
XLOC_024245 bnip2 coding downstream 276908 34246625 ~ 34268439 (+)
XLOC_023973 CR762411.1 misc upstream 18631538 15217824 ~ 15218109 (+)
XLOC_024247 NA non-coding downstream 508221 34477938 ~ 34487808 (+)
XLOC_024248 NA non-coding downstream 540871 34510588 ~ 34523239 (+)
XLOC_024249 BX323824.1 non-coding downstream 541488 34511205 ~ 34512944 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G29172 NA non-coding CI01000004 null 6044360 ~ 6045307 (-)
eurasian perch (Perca fluviatilis) G24525 NA non-coding NC_053113.1 CM020910.1 47490478 ~ 47517365 (+)
bowfin (Amia calva) G26319 NA non-coding CM030123.1 CM030123.1 30402565 ~ 30406647 (+)