XLOC_024245 (bnip2)


Basic Information

Item Value
gene id XLOC_024245
gene name bnip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34246625 ~ 34268439 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048038
AAAAGAAGAATGACGGCCGGTGGAAGCAACAGTTGAGATGGCTCGGCGGAGTTTGTCAGCCAATAAAAGCGTCTTAAATGCCGTTTTAAGTGTCATTTCCGAGCTTTGACATGATCGACACGCGTTTCTCACCGTTATATCGGATCATCTGACAGCGGTTTTGCTGAAGGAAGGAAACGGGAGAGGAAAAGGGACCGACTGCGCACTGCTGGcccactaaacacacacactagTTCACTTAAAAGGGCACGACTGTTTTGGGACATACGTAAAgcaacatttcaaaacaaaacaagtattattattaaccagAGATGTCTAACACTACGTAAAAGTTTAGTAAGTTTAATATTACGGCTTGTTTACGTTTATTCCATAAGTTCAAAGTTTAGTTTTGCTAATCGATTAATTGCTAATCGCTCTATCATGGCCACTGATGTCATACTATCGAGCGGAGAGGTTTCCAATCAGAGCGATATGAACGCCAACAGAACTGATCCCGAATCAGACACACCCAACCGGACATCTGAGAGTCCAGAAAACAGAAATATAAGCAGCGCCACATCTTTATCCACTTCTTCGGTTCGTACCGGGGAAGATGAGCCGCACGAGGACTCGGGAACGGGGATTTCGGTGGCGAATGGAAACCGAGCAGGAGATCCGCAGCAGGAAACAGAAAACACAGCAGAGACTCCAGACAATAGACAAAAACAAGGCGTGAGGACATCAACTCCTGTGAGACTGCCGCACACATCTGCGGGACAACACAATGGAAGCTTTGAGCACCAGGAGTCGGTGGCGACCACAGAGGCGCGGCTGAGGATGGAGGGGGTGGAGCTTAAGGAGGAGTGGCAGGATGAGGATTTCCCCAGGCCACTTCCAGAGGAGGAAGATATTCATCTTGATGAAGAGCTTTATACTGGTGAAGGAGCGCCTGCTTCCCAGTCTTACGGACTACACAGTGGAAAGAAAACCAAAAGGAAACTCTTGGCTCCGGACATCAGTCTGAATCTTGACCACAGCGAAGGCTCGGTGCTGTCGGATGAGTTGGACGAGAGCACAGAACTGGACCTGGATGATATCGACACTCCTTCCGACAACAGCAACGAGTTTGAGTGGGAAGATGATCTTCCAAAGCCCAAAAGTGCAGATCTGCTGCGTAAGGGTGTGGAGTCTGTGCAGGAGTACAGCACGTCAGAGGAGCGCGAGGAGGGCCGGCGCTGGAGAGTCTTCCGCATCGGAGATCAGGAGCACCGGGTGGACATGAAGGCCATCGAGCCCTACAAGAAGGTCATCAGTCATGGAGGATACTACGGCGATGGATTGAACGCCATCATCGTCTTCGCTGTTTGCTTTATGCCTGAGAGCAATCAACCGAATTACAGATACATCATGGATAATCTATTCAAGTATGTCATAGGAACTCTAGAGCTGCTCGTAGCGGAGAACTATATGATTGTATATCTGAACGGAGCCACCTCGCGCCGAAAGATGCCCAGTGTCGGCTGGCTCCGGAAGTGCTATCAGCAAATAGATCGAAGGTTAAGGAAGAATCTGAAGTCTCTGATAATCGTTCACCCGTCCTGGTTTATCCGCACCCTGCTCGCCCTCACAAAACCTTTTATAAGCTCCAAATTCAGCCAGAAAATCAAGTTTGTGTTTAGTCTGACAGACCTGGCCGAACTGGTCCCGATGGAGTATGTGTCCATCCCAGACTGCATTAAACAGTTTGACgaagaaaaaaataggaaaaagcATAAAAGGATTGATCGGGACATGCATGGAAAAGTGGAGATCGCCACTGCTGCGGTGCCGGAGTGA
>TCONS_00048039
CGCCAACAGAACTGATCCCGAATCAGACACACCCAACCGGACATCTGAGAGTCCAGAAAACAGAAATATAAGCAGCGCCACATCTTTATCCACTTCTTCGGTTCGTACCGGGGAAGATGAGCCGCACGAGGACTCGGGAACGGGGATTTCGGTGGCGAATGGAAACCGAGCAGGAGATCCGCAGCAGGAAACAGAAAACACAGCAGAGACTCCAGACAATAGACAAAAACAAGGCGTGAGGACATCAACTCCTGTGAGACTGCCGCACACATCTGCGGGACAACACAATGGAAGCTTTGAGCACCAGGAGTCGGTGGCGACCACAGAGGCGCGGCTGAGGATGGAGGGGGTGGAGCTTAAGGAGGAGTGGCAGGATGAGGATTTCCCCAGGCCACTTCCAGAGGAGGAAGATATTCATCTTGATGAAGAGCTTTATACTGGTGAAGGAGCGCCTGCTTCCCAGTCTTACGGACTACACAGTGGAAAGAAAACCAAAAGGAAACTCTTGGCTCCGGACATCAGTCTGAATCTTGACCACAGCGAAGGCTCGGTGCTGTCGGATGAGTTGGACGAGAGCACAGAACTGGACCTGGATGATATCGACACTCCTTCCGACAACAGCAACGAGTTTGAGTGGGAAGATGATCTTCCAAAGCCCAAAAGTGCAGATCTGCTGCGTAAGGGTGTGGAGTCTGTGCAGGAGTACAGCACGTCAGAGGAGCGCGAGGAGGGCCGGCGCTGGAGAGTCTTCCGCATCGGAGATCAGGAGCACCGGGTGGACATGAAGGCCATCGAGCCCTACAAGAAGGTCATCAGTCATGGAGGATACTACGGCGATGGATTGAACGCCATCATCGTCTTCGCTGTTTGCTTTATGCCTGAGAGCAATCAACCGAATTACAGATACATCATGGATAATCTATTCAAGTATGTCATAGGAACTCTAGAGCTGCTCGTAGCGGAGAACTATATGATTGTATATCTGAACGGAGCCACCTCGCGCCGAAAGATGCCCAGTGTCGGCTGGCTCCGGAAGTGCTATCAGCAAATAGATCGAAGGTTAAGGAAGAATCTGAAGTCTCTGATAATCGTTCACCCGTCCTGGTTTATCCGCACCCTGCTCGCCCTCACAAAACCTTTTATAAGCTCCAAATTCAGCCAGAAAATCAAGTTTGTGTTTAGTCTGACAGACCTGGCCGAACTGGTCCCGATGGAGAAGTGTTCAGTTGCAGAAAGTCCCCACACTGCTGTTCTCCACCAgcagttttcatttatttgattatttctgCTGTTGGCTGTGAATCTTCAGAAACTCTCCACGCTCTAACCCCTTCTCCCTGCCTTTCCTCTAAGGTTTGACgaagaaaaaaataggaaaaagcATAAAA
>TCONS_00048040
AACTCCTGTGAGACTGCCGCACACATCTGCGGGACAACACAATGGAAGCTTTGAGCACCAGGAGTCGGTGGCGACCACAGAGGCGCGGCTGAGGATGGAGGGGGTGGAGCTTAAGGAGGAGTGGCAGGATGAGGATTTCCCCAGGCCACTTCCAGAGGAGGAAGATATTCATCTTGATGAAGAGCTTTATACTGGTGAAGGAGCGCCTGCTTCCCAGTCTTACGGACTACACAGTGGAAAGAAAACCAAAAGGAAACTCTTGGCTCCGGACATCAGTCTGAATCTTGACCACAGCGAAGGCTCGGTGCTGTCGGATGAGTTGGACGAGAGCACAGAACTGGACCTGGATGATATCGACACTCCTTCCGACAACAGCAACGAGTTTGAGTGGGAAGATGATCTTCCAAAGCCCAAAAGTGCAGATCTGCTGCGTAAGGGTGTGGAGTCTGTGCAGGAGTACAGCACGTCAGAGGAGCGCGAGGAGGGCCGGCGCTGGAGAGTCTTCCGCATCGGAGATCAGGAGCACCGGGTGGACATGAAGGCCATCGAGCCCTACAAGAAGGTCATCAGTCATGGAGGATACTACGGCGATGGATTGAACGCCATCATCGTCTTCGCTGTTTGCTTTATGCCTGAGAGCAATCAACCGAATTACAGATACATCATGGATAATCTATTCAAGTATGTCATAGGAACTCTAGAGCTGCTCGTAGCGGAGAACTATATGATTGTATATCTGAACGGAGCCACCTCGCGCCGAAAGATGCCCAGTGTCGGCTGGCTCCGGAAGTGCTATCAGCAAATAGATCGAAGGTTAAGGAAGAATCTGAAGTCTCTGATAATCGTTCACCCGTCCTGGTTTATCCGCACCCTGCTCGCCCTCACAAAACCTTTTATAAGCTCCAAATTCAGCCAGAAAATCAAGTTTGTGTTTAGTCTGACAGACCTGGCCGAACTGGTCCCGATGGAGTATGTGTCCATCCCAGACTGCATTAAACAGATTGATCGGGACATGCATGGAAAAGTGGAGATCGCCACTGCTGCGGTGCCGGAGTGAAGTCTGCGAAGCTGGAAGAATTGAAGAATGTATTGGGTTTCTTTTAACTGGAGAACGCAAGATCTTGATGTCAAAAAAAAGTGCCTTTAAAAGAGATGGTCCggcccaaaaatgtaaattctaccATCATTTTTTCCAGAATGTCATTCCAAATATgacttctttttcttttctgtgGAACtataaaagaagatgttttgcaGAATGTCCAAGCTGCTCCTTTCAGCATCCAATCGCTTTCacttaaggggatagttcacgcaaaaataacaatgtactcaCTTATTACTCGGTGATTACGACCCTTTCTTAATCTGTTGACAAAGAtcattgaagaatgttgaaaacctgtaaccatccacATCCGTTGGAGGAAAACAAACATTATGAAAGGCAGTCATAGGTGTTCagctttctttgaaatatcttcctttgtgttcaaaagaacttGAGACACGTAAAGGGCGAttagatgatgacagaattttcatatttgggtgaattgTATCTCTAAATGTAACCGGGCAGCATCAGAACACTCATAAAAACGccttttaaagggaaagttcagccCATAAAATGTAAATCCTCCCATCATTCAACTAAAGATGTTTTGCAGAATGTTCAAGCTGCTCCTTCAGCacaaaaaaatgtcaattctgcctttatttaattcataatgtcatacaaatatgattttttttcctgtGGAACTAAAAAAGATGTTTTGCAGAATGTCCAAGCTGCTCGTTTCAGCATTCaatcacttaaagggatagttcatataaaaaaaaattacaatttactcaGTGATTATGAaccttttttaatttgttgaacacaaagggagatattttgaaaaatgctgaaaacctgtaaccattgacttctattatagtaaaaaaactattatggaagtcaatggttacaggtgtttGGCTTTCTTTAATATAACatcctttgtgttcaaaagaactCGTGActagtaaagggtgagtaaatga

Function

symbol description
bnip2 Predicted to enable exopolyphosphatase activity. Predicted to be involved in apoptotic process and polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human BNIP2 (BCL2 interacting protein 2).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006798 polyphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004309 exopolyphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040109-6 Predicted to enable exopolyphosphatase activity. Predicted to be involved in apoptotic process and polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human BNIP2 (BCL2 interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000013397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048038 False 1821 mRNA 0.49 11 34246625 34267435
TCONS_00048039 False 1388 mRNA 0.51 10 34247107 34261132
TCONS_00048040 True 2061 mRNA 0.43 10 34247353 34268439

Neighbor

gene id symbol gene type direction distance location
XLOC_024244 NA coding upstream 108282 34054756 ~ 34138343 (+)
XLOC_024243 NA coding upstream 196223 34035503 ~ 34050402 (+)
XLOC_024242 anxa2a coding upstream 219185 34013093 ~ 34027440 (+)
XLOC_024241 ice2 coding upstream 236950 33972019 ~ 34009675 (+)
XLOC_024240 roraa coding upstream 276908 33849647 ~ 33969717 (+)
XLOC_024246 OTUD7A coding downstream 139090 34407529 ~ 34458452 (+)
XLOC_024247 NA coding downstream 209499 34477938 ~ 34487808 (+)
XLOC_024248 NA coding downstream 242149 34510588 ~ 34523239 (+)
XLOC_024249 BX323824.1 coding downstream 242766 34511205 ~ 34512944 (+)
XLOC_024250 trpm1b coding downstream 307628 34576067 ~ 34615463 (+)
XLOC_023973 CR762411.1 misc upstream 19028516 15217824 ~ 15218109 (+)
XLOC_024239 CABZ01071679.1 non-coding upstream 465997 33780513 ~ 33780628 (+)
XLOC_024238 CABZ01071677.1 non-coding upstream 517227 33729284 ~ 33729398 (+)
XLOC_024237 NA non-coding upstream 636672 33605601 ~ 33609953 (+)
XLOC_024252 NA non-coding downstream 400267 34668706 ~ 34669702 (+)
XLOC_024254 mir140 non-coding downstream 522923 34791362 ~ 34791466 (+)

Expression


Co-expression Network