XLOC_024243


Basic Information

Item Value
gene id XLOC_024243
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34035503 ~ 34050402 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049062
CTTTCATTTCCAGAACTAGATAAAAGGGGGGAGGTAGTGATCCGAGAGGCAGAACTAACATTCAACTGCTCAGGCTTTGTTCTGCTTGCTCCGCATTGTCTCTGAGATCTGCCGATCAGCAAgGGTGACACTACAACTTTTACATTATTATGGAATTTGGAAGGAAGATCAGGATGGGGTCATCCAATTCAAAGCGCATCAGAGAA
>TCONS_00048036
CTTTCATTTCCAGAACTAGATAAAAGGGGGGAGGTAGTGATCCGAGAGGCAGAACTAACATTCAACTGCTCAGGCTTTGTTCTGCTTGCTCCGCATTGTCTCTGAGATCTGCCGATCAGCAAgGGTGACACTACAACTTTTACATTATTATGGAATTTGGAAGGAAGATCAGGATGGGGTCATCCAATTCAAAGCGCATCAGAGAAcTCAGAGATGACATTGAGGCTATCACAACTAACACAGCTAAAGATTCTCCTACTCATCGCCAGAATTCTAATAATAAAGATTCTGATATTAAATCAGACATTAGGAGACTGATTGAGATCCTCGGCTGTCGAAGCAATGATGAGATAAAGAAGATCAAAAAAGACTACAAGGAATTGTTCAAGGAGGATCTGGAGAAGTATCTGGCTGAAATTACTTCAGGAGACTTAAAGGAACTCCTGCTTGCTCTGCTTGAGGCCAACAGAGACGAGAAGCCTTATTCCGTTGATGACAAGCAAATTGATAAAGATGCCAGAAAGCTGTGTGATTTTCAAAAAGATGACAAAGATAAGGAGAGCTACATCaccatcatgacaaagaaaagCTTTCATCACCTCAAGGAAGTGTTTGAAAAATACAAGGACTACTACGAGCAGGAGGACTCCACCAAAAAAGAACTGCAGGAGTCCTTCCAGTGGCTTGTTCagtgtattaaaaacaaaccGATGTAAGACTGCATGACGTCTGAAagAAGCACACAGAGGGAGATTAACAGCGGGCCCTGCTGAACCTGTGCAATGGAGACGACTGAGGATTGGAGGAGAACTGGAGCTCTGAGGTCCAAATGGAGATCTCCATATACTCTCTACCCTGCTGCAGCTTTATCCATTATCTAAAccaagaaataaaaacatttaca
>TCONS_00048037
AGACTACAAGGAATGTGAGTATGGCAGTGTTTAACTGCACTGATTAGAAGTTTGTGCTTATGATATAAACATGTGTCTCATCACAGTGTTCAAGGAGGATCTGGAGAAGTATCTGGCTGAAATTACTTCAGGAGACTTAAAGGAACTCCTGCTTGCTCTGCTTGAGGCCAACAGAGACGAGAAGCCTTATTCCGTTGATGACAAGCAAATTGATAAAGATGCCAGAGTAAGTCTTTGCGgtttatttctcagaatttaataattaaatattttttcattaaataacatATCTGGATTTACTGATTGACAAACATTTTTTGATTACTCAATGGTGTTTAAAACAAAAGCATgacaaatacaataataaacatgAAGAGTAATAACT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0070570 regulation of neuron projection regeneration biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0017144 drug metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048679 regulation of axon regeneration biological_process
GO:0016043 cellular component organization biological_process
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097513

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049062 False 206 lncRNA 0.45 3 34035503 34036111
TCONS_00048036 False 904 lncRNA 0.42 12 34035503 34050402
TCONS_00048037 True 385 lncRNA 0.34 2 34043280 34043756

Neighbor

gene id symbol gene type direction distance location
XLOC_024242 anxa2a coding upstream 8063 34013093 ~ 34027440 (+)
XLOC_024241 ice2 coding upstream 25828 33972019 ~ 34009675 (+)
XLOC_024240 roraa coding upstream 65786 33849647 ~ 33969717 (+)
XLOC_024239 CABZ01071679.1 coding upstream 254875 33780513 ~ 33780628 (+)
XLOC_024238 CABZ01071677.1 coding upstream 306105 33729284 ~ 33729398 (+)
XLOC_024244 NA coding downstream 4354 34054756 ~ 34138343 (+)
XLOC_024245 bnip2 coding downstream 196223 34246625 ~ 34268439 (+)
XLOC_024246 OTUD7A coding downstream 357127 34407529 ~ 34458452 (+)
XLOC_024247 NA coding downstream 427536 34477938 ~ 34487808 (+)
XLOC_024248 NA coding downstream 460186 34510588 ~ 34523239 (+)
XLOC_023973 CR762411.1 misc upstream 18817394 15217824 ~ 15218109 (+)
XLOC_024237 NA non-coding upstream 425550 33605601 ~ 33609953 (+)
XLOC_024236 NA non-coding upstream 531939 33501345 ~ 33503564 (+)
XLOC_024235 NA non-coding upstream 595883 33407120 ~ 33439620 (+)
XLOC_024249 BX323824.1 non-coding downstream 460803 34511205 ~ 34512944 (+)
XLOC_024252 NA non-coding downstream 618304 34668706 ~ 34669702 (+)

Expression


Co-expression Network