RNA id: TCONS_00048037


Basic Information

Item Value
RNA id TCONS_00048037
length 385
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_024243
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34035503 ~ 34050402 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTACAAGGAATGTGAGTATGGCAGTGTTTAACTGCACTGATTAGAAGTTTGTGCTTATGATATAAACATGTGTCTCATCACAGTGTTCAAGGAGGATCTGGAGAAGTATCTGGCTGAAATTACTTCAGGAGACTTAAAGGAACTCCTGCTTGCTCTGCTTGAGGCCAACAGAGACGAGAAGCCTTATTCCGTTGATGACAAGCAAATTGATAAAGATGCCAGAGTAAGTCTTTGCGgtttatttctcagaatttaataattaaatattttttcattaaataacatATCTGGATTTACTGATTGACAAACATTTTTTGATTACTCAATGGTGTTTAAAACAAAAGCATgacaaatacaataataaacatgAAGAGTAATAACT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0070570 regulation of neuron projection regeneration biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0017144 drug metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048679 regulation of axon regeneration biological_process
GO:0016043 cellular component organization biological_process
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000155626

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049062 lncRNA upstream 7169 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00049061 lncRNA upstream 433327 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049060 lncRNA upstream 539716 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049271 lncRNA upstream 603660 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049270 lncRNA upstream 694545 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049063 lncRNA downstream 11000 34054756 ~ 34138343 (+) False XLOC_024244
TCONS_00049272 lncRNA downstream 11119 34054875 ~ 34137434 (+) True XLOC_024244
TCONS_00049274 lncRNA downstream 434182 34477938 ~ 34487808 (+) False XLOC_024247
TCONS_00049273 lncRNA downstream 434182 34477938 ~ 34487808 (+) True XLOC_024247
TCONS_00049275 lncRNA downstream 466832 34510588 ~ 34523239 (+) True XLOC_024248
TCONS_00048035 mRNA upstream 15840 34014523 ~ 34027440 (+) True XLOC_024242
TCONS_00048034 mRNA upstream 15901 34013093 ~ 34027379 (+) False XLOC_024242
TCONS_00048032 mRNA upstream 33605 33972019 ~ 34009675 (+) False XLOC_024241
TCONS_00048033 mRNA upstream 34755 33972153 ~ 34008525 (+) True XLOC_024241
TCONS_00048031 mRNA upstream 73563 33939728 ~ 33969717 (+) True XLOC_024240
TCONS_00048038 mRNA downstream 202869 34246625 ~ 34267435 (+) False XLOC_024245
TCONS_00048039 mRNA downstream 203351 34247107 ~ 34261132 (+) False XLOC_024245
TCONS_00048040 mRNA downstream 203597 34247353 ~ 34268439 (+) True XLOC_024245
TCONS_00048041 mRNA downstream 363773 34407529 ~ 34458452 (+) False XLOC_024246
TCONS_00048042 mRNA downstream 363984 34407740 ~ 34458452 (+) True XLOC_024246
TCONS_00048029 other upstream 262652 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 313882 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048019 other upstream 904080 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 1431841 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 3061833 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048052 other downstream 731802 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 747606 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 1837659 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048139 other downstream 2413044 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 2465918 36509674 ~ 36509789 (+) True XLOC_024328

Expression Profile

//