RNA id: TCONS_00049271


Basic Information

Item Value
RNA id TCONS_00049271
length 805
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_024235
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33407120 ~ 33439620 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGACACGTCGTGCCCCGTTTTCATCAGCTACCAGCAGATCCATCCATCACCAGCGATCAGATGGTGTTTTTCTAACCAAGCAACACAGGGTGACATGTATTTTCCTCAATAGTCCTAGATCCGGCCATTAATCATCCTCGCAAACATGAGCGAAGAAGAGGGCAACGTTGAGAGTGGAAAAAAAGGCAAATGGAATAAAGCGAGAACtagatgatgttttttttttcatcctctACAAACTGTCCTGTGTCAACAAGAGCAGCGGTGGAAATTTGAAAGAAAGTTTCCATTTAAATGAGCGCCGGCGAGTGGCGTAGGCACTTTGAAGAGCTGAGAGCGaagcgacaacaacaacaacaaaaaaagagcagCGTCTTGGCCTGCGTTTCGGAGCCGGCTTTGACACCTGATGAGTGATCAAACGTTGCTTTTTCCTTACCCAACCATCCTGTGTTGTAGTCAGATAATTCAGCAGGCCATGTTACTAGAAcgtccctaaaaaaaaaaaaaatctacatttatgaACCCTCAGATCACAGCCTTGTGGGCCCTCAAAAGGACACTCTTGTGGCTTGGGATTGTTGTTTTCGTTTTGTGAAAACAAACGGTGAAGAGCTAACGGATGAGTTTGTAATGAAAGATTTAATGTAGTTATCTTGAACTGGCTGGAAACACAATGGCACCAGGTGACACGATGAAAATGAAATTGATTAAATATAGCAAGGCTTCCAACATCTGCTGAATGTTTTAGGTCAAACGTAGAAAGAACGATTTCAgtagtgtatttatttaaagaaaattgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049270 lncRNA upstream 58385 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049059 lncRNA upstream 371016 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049267 lncRNA upstream 1903651 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA upstream 1903651 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA upstream 1903651 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00049060 lncRNA downstream 61725 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 165981 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049062 lncRNA downstream 595883 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00048036 lncRNA downstream 595883 34035503 ~ 34050402 (+) False XLOC_024243
TCONS_00048037 lncRNA downstream 603660 34043280 ~ 34043756 (+) True XLOC_024243
TCONS_00048027 mRNA upstream 140567 33256012 ~ 33266553 (+) True XLOC_024233
TCONS_00048026 mRNA upstream 156797 33202294 ~ 33250323 (+) True XLOC_024232
TCONS_00048025 mRNA upstream 162277 33201727 ~ 33244843 (+) False XLOC_024232
TCONS_00048024 mRNA upstream 166376 33201727 ~ 33240744 (+) False XLOC_024232
TCONS_00048023 mRNA upstream 169787 33192935 ~ 33237333 (+) False XLOC_024232
TCONS_00048030 mRNA downstream 410027 33849647 ~ 33963212 (+) False XLOC_024240
TCONS_00048031 mRNA downstream 500108 33939728 ~ 33969717 (+) True XLOC_024240
TCONS_00048032 mRNA downstream 532399 33972019 ~ 34009675 (+) False XLOC_024241
TCONS_00048033 mRNA downstream 532533 33972153 ~ 34008525 (+) True XLOC_024241
TCONS_00048034 mRNA downstream 573473 34013093 ~ 34027379 (+) False XLOC_024242
TCONS_00048019 other upstream 267920 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 795681 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 2425673 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 2435160 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 3069131 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00048028 other downstream 289664 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 340893 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 1335938 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 1351742 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 2441795 35881415 ~ 35881531 (+) True XLOC_024292

Expression Profile

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