RNA id: TCONS_00049059


Basic Information

Item Value
RNA id TCONS_00049059
length 392
lncRNA type sense_over
GC content 0.51
exon number 2
gene id XLOC_024229
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33029618 ~ 33036104 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTGACCCTGCAGATGTGGTTGTCATTTATTCACACAAATGTTTATCGATGGTGTTATCTTACAGAAGCAGAGTAAAGACCGGTTCGGTTTGGACGGGGATGAAGAATCCACCATGCTGGAAGAATCTGTATCGCCAAAAAAGTCCACCATCCTCCAGCAGCAGTTTAACCGGGTGGGTCGAGTCGAGCACGGGTCGGTGGCGCTGCCTGGCATCATGCGTTCAGGGTCAATAGGAGGCCCCGACACTTTCAACATGGGCACGATGCCCTCAGCCCAACAGCAAATCACCATGGGACAGATGCACAGAGGACACATGCCCCCTCTGGTCAGAAACCGCAACTGCACTGTTCTTTATGTTCATAGTTGAGTCAATAGAGCGGTTCTGCTTT

Function

GO:

id name namespace
GO:0051977 lysophospholipid transport biological_process
GO:1990379 lipid transport across blood-brain barrier biological_process
GO:0045056 transcytosis biological_process
GO:0051978 lysophospholipid molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049267 lncRNA upstream 1526149 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA upstream 1526149 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA upstream 1526149 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00047992 lncRNA upstream 1619744 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049266 lncRNA upstream 1633937 31388117 ~ 31395681 (+) True XLOC_024216
TCONS_00049270 lncRNA downstream 308690 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049271 lncRNA downstream 371016 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049060 lncRNA downstream 465241 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 569497 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049062 lncRNA downstream 999399 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00048013 mRNA upstream 13147 33002963 ~ 33016471 (+) True XLOC_024228
TCONS_00048012 mRNA upstream 242371 32755485 ~ 32787247 (+) True XLOC_024227
TCONS_00048010 mRNA upstream 289894 32530976 ~ 32739724 (+) False XLOC_024226
TCONS_00048009 mRNA upstream 406489 32530976 ~ 32623129 (+) False XLOC_024226
TCONS_00048008 mRNA upstream 487679 32525131 ~ 32541939 (+) False XLOC_024226
TCONS_00048015 mRNA downstream 9956 33046060 ~ 33078279 (+) False XLOC_024230
TCONS_00048016 mRNA downstream 27658 33063762 ~ 33151690 (+) False XLOC_024230
TCONS_00048017 mRNA downstream 36572 33072676 ~ 33151690 (+) False XLOC_024230
TCONS_00048018 mRNA downstream 36644 33072748 ~ 33151690 (+) True XLOC_024230
TCONS_00048020 mRNA downstream 156300 33192404 ~ 33240744 (+) False XLOC_024232
TCONS_00048011 other upstream 418179 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 2048171 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 2057658 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 2691629 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047963 other upstream 2853059 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00048019 other downstream 102971 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048028 other downstream 693180 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 744409 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 1739454 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 1755258 34791362 ~ 34791466 (+) True XLOC_024254

Expression Profile

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