RNA id: TCONS_00049267


Basic Information

Item Value
RNA id TCONS_00049267
length 660
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_024218
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 31497318 ~ 31503469 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATTTGTCTTTCTGCTGCCCCCATCAGTCAGGGCAGGTGTGGGCCATCCTGAGTCAGTTCCAGAAGCCCCTGCACGTCCCACCTGTTCTCTGCATGCTCCCCTTGGCCCTTGACCTGATGACCAACTTTTTATCCCCCTCAACCCGGTGGCAACTGTGGCCCAGGGGCCGGATGGCTTTCATAAATAATCGCTGGTCTAAACAGACAGTGTGAGCCCACCAGCGCTACAGTCTCTACTTTTGACCTCCTACTGCTCCTCTCACTCATTTAGCTCATTTCATTGTTTTTCTCACTGGTCTAAATTATGATATACAGGCATTAATACGTAATAGCATGTAATAGTATAGTAATAACAGTCTAAGGCCATTGGGTGTGGTTTTATCTGTCACTAAATGTATTACTCAAGGAAAGCAATTATCTTGTCAACTGATTAGCTTGTTTTTCTTAAGAAAATATAGTCATTGGGTCTCATTTTTATGTGTATCACCAAATTAAAGgcctacactgtgaaaaaaatctgtaattttatgatttatttccggcagctggggtgtgTGGGGTGTTAAtgtaatgtctgttattttatggtaaatttatgtaatttaatgtccattattttatgataaatttctgtgatttaatgtCCGTCATTttgcgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047992 lncRNA upstream 87444 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049266 lncRNA upstream 101637 31388117 ~ 31395681 (+) True XLOC_024216
TCONS_00047989 lncRNA upstream 153204 31323970 ~ 31344114 (+) False XLOC_024215
TCONS_00049265 lncRNA upstream 238435 31248998 ~ 31258883 (+) True XLOC_024212
TCONS_00047978 lncRNA upstream 456593 30915178 ~ 31040725 (+) False XLOC_024206
TCONS_00049059 lncRNA downstream 1526149 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049270 lncRNA downstream 1841325 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049271 lncRNA downstream 1903651 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049060 lncRNA downstream 1997876 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 2102132 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00047991 mRNA upstream 78861 31405266 ~ 31418457 (+) False XLOC_024217
TCONS_00047990 mRNA upstream 102803 31323978 ~ 31394515 (+) True XLOC_024215
TCONS_00047988 mRNA upstream 208660 31277415 ~ 31288658 (+) True XLOC_024214
TCONS_00047987 mRNA upstream 208762 31276842 ~ 31288556 (+) False XLOC_024214
TCONS_00047986 mRNA upstream 221374 31267268 ~ 31275944 (+) True XLOC_024213
TCONS_00047993 mRNA downstream 364799 31868268 ~ 31882618 (+) True XLOC_024219
TCONS_00047994 mRNA downstream 408684 31912153 ~ 31935817 (+) False XLOC_024220
TCONS_00047995 mRNA downstream 425856 31929325 ~ 31941241 (+) True XLOC_024220
TCONS_00047996 mRNA downstream 455442 31958911 ~ 31985487 (+) False XLOC_024221
TCONS_00047998 mRNA downstream 455442 31958911 ~ 32018990 (+) False XLOC_024221
TCONS_00047980 other upstream 515871 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 525358 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 1159329 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047963 other upstream 1320759 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047922 other upstream 2993353 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00048011 other downstream 1079271 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00048019 other downstream 1635606 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048028 other downstream 2225815 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 2277044 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 3272089 34775558 ~ 34789619 (+) True XLOC_024253

Expression Profile

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