RNA id: TCONS_00047995


Basic Information

Item Value
RNA id TCONS_00047995
length 570
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_024220
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 31912153 ~ 31941241 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagaatgtggttttgcattgtcttCTTCATCTGGAGAAGCAGAAGGGGGAGATTTTGGGTGTAGTGATCGTAGAGTCGGGCTGGGGCTCCATCCTGCCCACCGTCATCCTGGCCTGCATGCTGAACAACGGCCCTGCTGCCCGCTCCGGAAAGCTGAATGTGGGCGATCAGATCATGGCCGTCAACGACACCAGTCTGGTGGGCCTGCCGCTCGCTGCCTGCCAGGGCATCATCAAGGCCCTGAAGAATCACGTTCAGGTGAAGCTGAGTGTAGTGAGTTGCCCACCCGTTACGACCGTCCTCATAAAGAGACCAGACCTGCAATACCAGCTCGGGTTCAGTGTTCAGAACGGCATAATCTGCAGTCTGATGCGTGGAGGGATTGCGGAGAGAGGAGGAGTTCGCGTCGGCCACAGAATAATTGAGATAAATGGACAGAGTGTGGTCGCAATGGCGCATGAGAAAATCGTCCACGCCCTTTCAGTATCTGTAGGAGAGATTAACATGAAAACCATGCCCGCCGTCATGTTCAGATTGCTAACTGGACAAGAGACGCCGGTGTACATGTGA

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001540 amyloid-beta binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121107-1 Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to be located in synaptic vesicle. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA2 (amyloid beta precursor protein binding family A member 2).

Ensembl:

ensembl_id ENSDART00000181095

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049267 lncRNA upstream 425856 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA upstream 425856 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA upstream 425856 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00047992 lncRNA upstream 519451 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049266 lncRNA upstream 533644 31388117 ~ 31395681 (+) True XLOC_024216
TCONS_00049059 lncRNA downstream 1088377 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049270 lncRNA downstream 1403553 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049271 lncRNA downstream 1465879 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049060 lncRNA downstream 1560104 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 1664360 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00047993 mRNA upstream 46707 31868268 ~ 31882618 (+) True XLOC_024219
TCONS_00047991 mRNA upstream 510868 31405266 ~ 31418457 (+) False XLOC_024217
TCONS_00047990 mRNA upstream 534810 31323978 ~ 31394515 (+) True XLOC_024215
TCONS_00047988 mRNA upstream 640667 31277415 ~ 31288658 (+) True XLOC_024214
TCONS_00047987 mRNA upstream 640769 31276842 ~ 31288556 (+) False XLOC_024214
TCONS_00047996 mRNA downstream 17670 31958911 ~ 31985487 (+) False XLOC_024221
TCONS_00047998 mRNA downstream 17670 31958911 ~ 32018990 (+) False XLOC_024221
TCONS_00047997 mRNA downstream 17670 31958911 ~ 32018990 (+) True XLOC_024221
TCONS_00047999 mRNA downstream 90295 32031536 ~ 32271394 (+) False XLOC_024222
TCONS_00048000 mRNA downstream 130317 32071558 ~ 32271394 (+) False XLOC_024222
TCONS_00047980 other upstream 947878 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 957365 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 1591336 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047963 other upstream 1752766 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047922 other upstream 3425360 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00048011 other downstream 641499 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00048019 other downstream 1197834 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048028 other downstream 1788043 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 1839272 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 2834317 34775558 ~ 34789619 (+) True XLOC_024253

Expression Profile

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