Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047987 |
| length | 1331 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | XLOC_024214 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 31276842 ~ 31288658 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006936 | muscle contraction | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0003009 | skeletal muscle contraction | biological_process |
| GO:0060048 | cardiac muscle contraction | biological_process |
| GO:0005861 | troponin complex | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040625-119 | Acts upstream of or within myofibril assembly. Predicted to be part of troponin complex. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; distal arthrogryposis type 2B1; and intrinsic cardiomyopathy (multiple). Orthologous to several human genes including TNNI2 (troponin I2, fast skeletal type). |
| ensembl_id | ENSDART00000187238 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049265 | lncRNA | upstream | 17959 | 31248998 ~ 31258883 (+) | True | XLOC_024212 |
| TCONS_00047978 | lncRNA | upstream | 236117 | 30915178 ~ 31040725 (+) | False | XLOC_024206 |
| TCONS_00049058 | lncRNA | upstream | 248896 | 30978055 ~ 31027946 (+) | True | XLOC_024206 |
| TCONS_00049264 | lncRNA | upstream | 913947 | 30360507 ~ 30362895 (+) | True | XLOC_024202 |
| TCONS_00049057 | lncRNA | upstream | 931916 | 30342200 ~ 30344926 (+) | True | XLOC_024201 |
| TCONS_00047989 | lncRNA | downstream | 35414 | 31323970 ~ 31344114 (+) | False | XLOC_024215 |
| TCONS_00049266 | lncRNA | downstream | 99561 | 31388117 ~ 31395681 (+) | True | XLOC_024216 |
| TCONS_00047992 | lncRNA | downstream | 116715 | 31405271 ~ 31409874 (+) | True | XLOC_024217 |
| TCONS_00049267 | lncRNA | downstream | 208762 | 31497318 ~ 31503469 (+) | False | XLOC_024218 |
| TCONS_00049269 | lncRNA | downstream | 213311 | 31501867 ~ 31503469 (+) | False | XLOC_024218 |
| TCONS_00047986 | mRNA | upstream | 898 | 31267268 ~ 31275944 (+) | True | XLOC_024213 |
| TCONS_00047985 | mRNA | upstream | 1052 | 31264155 ~ 31275790 (+) | False | XLOC_024213 |
| TCONS_00047984 | mRNA | upstream | 28240 | 31238606 ~ 31248602 (+) | True | XLOC_024211 |
| TCONS_00047983 | mRNA | upstream | 40293 | 31227747 ~ 31236549 (+) | True | XLOC_024210 |
| TCONS_00047982 | mRNA | upstream | 40298 | 31222069 ~ 31236544 (+) | False | XLOC_024210 |
| TCONS_00047990 | mRNA | downstream | 35422 | 31323978 ~ 31394515 (+) | True | XLOC_024215 |
| TCONS_00047991 | mRNA | downstream | 116710 | 31405266 ~ 31418457 (+) | False | XLOC_024217 |
| TCONS_00047993 | mRNA | downstream | 579712 | 31868268 ~ 31882618 (+) | True | XLOC_024219 |
| TCONS_00047994 | mRNA | downstream | 623597 | 31912153 ~ 31935817 (+) | False | XLOC_024220 |
| TCONS_00047995 | mRNA | downstream | 640769 | 31929325 ~ 31941241 (+) | True | XLOC_024220 |
| TCONS_00047980 | other | upstream | 295395 | 30981333 ~ 30981447 (+) | True | XLOC_024208 |
| TCONS_00047979 | other | upstream | 304882 | 30971844 ~ 30971960 (+) | True | XLOC_024207 |
| TCONS_00047974 | other | upstream | 938853 | 30316839 ~ 30337989 (+) | True | XLOC_024200 |
| TCONS_00047963 | other | upstream | 1100283 | 30176471 ~ 30176559 (+) | True | XLOC_024196 |
| TCONS_00047922 | other | upstream | 2772877 | 28503850 ~ 28503965 (+) | True | XLOC_024172 |
| TCONS_00048011 | other | downstream | 1294184 | 32582740 ~ 32611439 (+) | True | XLOC_024226 |
| TCONS_00048019 | other | downstream | 1850519 | 33139075 ~ 33139200 (+) | True | XLOC_024231 |
| TCONS_00048028 | other | downstream | 2440728 | 33729284 ~ 33729398 (+) | True | XLOC_024238 |
| TCONS_00048029 | other | downstream | 2491957 | 33780513 ~ 33780628 (+) | True | XLOC_024239 |
| TCONS_00048052 | other | downstream | 3487002 | 34775558 ~ 34789619 (+) | True | XLOC_024253 |
