RNA id: TCONS_00047990


Basic Information

Item Value
RNA id TCONS_00047990
length 3470
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_024215
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 31323970 ~ 31394515 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCACAGGAAAGAGCGGGAGTGTTTCTGAAACTGATTCACTGGATACAAAACTTGCCAGAATTCATCTCGGGGAAGAAAGAACAATGTCAAGTGCTATCATGAGACGAAGCTCTAGCAAGCAAGGTTTGCAGAATCTCCTGAGAGTAACGGCTCAGCGAAGTATCGAAGATGCTGAGGAGATTGAGAGAGAAAGGCGCCGTCGGGCCCGGGAGGCTTTCCGAAATCAGCACAGCCTGTCTGGATCTGCTGGATCCCCTCAGGACAGCGCGAACCCACCTGAGGCCAGCCTCTTCGAAAGTGAATTAAAACCCAGCAGTCCCGTTGCTCTGGATGAGGATGAAGGTTTTAGTGACTGGACCCAGAAGCTGGAACGGAGAACACGGCTCAAAATGGAAGAGACGGCCAATGGAGAGAAGTTGCAAGAAGAGaagaaaaatgtaaacacaagaccGAAACAAATAGAGAAGAGCAGTTTCACAAGTTCTGTAGAGCATCATCAAACTCAGGACAGAGAAGGAGAGGATAAACGTTCAGACAGTATCACTAAGAAACCAATGGAGATCAGTGAGAGGCTGTACTCTCAGAGAGCAGAAGAACGGCTTGATCACAGCAAAAGAAGACAACCAGAAATAAAACCACCAACGGAGAATAAGGCTAAAGAGGAGAGGAAAGAGGTGAAGGTTTCATACACATCCAAAGTCTTCCTACAGCAAGAGAGGATTCCTAATGGGAAAGCAGAGGCAGCGCCAGAGGAAGTGACACCAAATCCAGTGAAAACCAAAAGATCACCTAGCAGAATCGTTGATACCAATCAGGTCTTCGAGACTAAGAAGGACACACATGCCGTCCTGGAGACAGAGCTGAAGCTGGAGAAGATTAGACGTAGCCATCAGGAAAAGGAGAATCAGGAAATGGAGAATCTACGACAGCGCCAAGCCGAGGCTGAGCTAGAGCTGGAGGAACTGAAGAAGAAGAGAGAGGAACGGCGCAAAACCCGTGAAGAAGAAGAGCGGAGGAGAGAGGAAGAGGAACAGCTGAAGCAGACCAAAAAAGAGGAGGACAAAAGACAGATGAAGGAGGACATCGAGAGGAGGAGGATGGAAGCAGTGgagaaaagaatgaaaaatatCAACGTCTCTCCCACTGATGGTGATGATCCATTTAATCCGCTGAACCCCATGAGTCCAACATTCAAGATAACTGAAAGGACAGAATCCCTGAATCGCTCTTTAAAGAAGAGCAACAGCTTCAAGAAGACCCAGAGACCTGTACTGCTGCCCAAGATTGATGACAAGCTGGAACAATACACACATGCCATTGAGATCTCTTCTAAAGAAGCAAAGACGCTTAAGTCAGCAGCAGTGGACATGCCCTGTGTCTCCGCTCCGGTGGCCTCCAAAAAAACTCTGTTTGAAGGAGGAGAAGTCTGGAGTCAAACCAGCCTAAAGGGAATGCCTTCTAAGGATGCCGACTGTGTGAAAGTAGGTGTAGCAAACCTGATCAACCATTGGGTGAAAGGAAGCCCGGAAGGTGGGAACAGACACTCCCCTTCTGCACCATCTGATGTTAAATCTGGAGGTGTTATGCGGAAAAAGAACATGTGGGAAATTATTGGAGAAGGTTCTGCAGCTGAGAGATCGGGTCTGGGAGGAAAGGGATCCTCCTTGGGTAAACGGTACAAGTTTGTTGTGACAGGCCATGGGAAATACGAAAAAATTCCCACTGATGATGATCACTACAGTGCTTACCCAAATGGAAAATCAAGTGATTTATCCAACGATGACTTGTGAAGAATTGAATACATCAAAACCATGATTCACAAAGAACATACATTACCATATAGATTCAATCAATTAAGGAAGAAACAATTGCATTGCATTGTATTTGTATTTCTGTCTTTGATTTCTGATGAAAAAAACAGGATGTATTCTTTTGTTTGTCtcatttacaatgtaaaaaaaacaaacttattgTCAGATATCTGAtcaaattacacagaatataaaCTTGTGGTTTCTCTTTttctcagaatattttttttttgtgccaatATGTTCATATTTAACGATATATGTTAGTTTGAGCTGAATGTGAATATCAAAAAGATAAAGcaatttttgtcatgtttttattttgaataccTATGCCATGGGTGTCAAAtttagttcctggagggccgcagatttagttccaaccctatcaaacacagctgatccgaAAAATCGAGGTGTTCAAGAGAGTCACaaacaccttcattagttggatcagctgtgtttgatcagggctgGAGCAAAACAGTGCAGAGTtgtggccctctaggaattgagtttgagaccattgaccTATTTTTATACTTTGaccatttgtttttacatttatatagactTGGATACAATTTAATAGTTGATGAATAGTAGAACATGCCAAAACATTAGAAATCCATGCGTCTGATTCTGACAACTgaggctaattctgaaaacgtagtcctgtggatgtttctggagaccacgaaaaaCGGTGCgtatttttgcagtgtttgtttttgcgaatccgcaagaggccgctgtgtgcactttttcggatctcaaatgtctctcgtgagtgccgttTGCTCCCATGCTGTTCTTGCATAAGCCCACCAGAGGCCACAGTCgaccgactgaatgattgactggtcgaccggccaatcgactgacccaccctcctccttccctaaatcaaACCAATTTAaccgactgacccgcccacccacttactttcctaaacccaaccgacggtttacaaaagccgccCAGAAAAAGAAATGCCCTGGTCtcattttttaccacgttttcggattttaccacattttcaccctgttatttacttgttaattttattttttgaattgtgtttttatgaaccgctcttccctggactcgaatcCGGCCGTTGTCGTCAACTCcccaagtccgccaacgtacgcgacgagctaactggacaaactggctgCAGTGGGAAAgtcctccacacagaggtaatcTGTCAGccggtaagcacgaaaaggaacaacGTCATACCGACCCGTTGgctgcatgtcattaaaaaaatgaaatgcagccttcGTCTATATAATTCGCGGTCTctagaaacgtccacgggacttcagaatgagcctgtgttggattcTGGTCATTCTTGCATTGTATTGTAAGTCATTATCGATCTTTGTTTTGACTTGTGCTGTTATATAATTGTATTTCCTCTGCTCTTGTTCTTTATTGTATTGTGTAATCAGCCacactttttgttttttcaagaaAACACTGGAATTAGTCcatttatcatatttatattattaatataaacctTTTTTGTCCATTTAAAAGCTTTTTCTACAGATCCGTACTGAGAATGGTTATAATAAGAATGTGATTATAGCCCACTGCCGCTtgttattttcaataaatttgatattttttatgatt

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0022612 gland morphogenesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035270 endocrine system development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003779 actin binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-171 Predicted to enable actin binding activity; calmodulin binding activity; and myosin binding activity. Predicted to act upstream of or within muscle contraction. Orthologous to human LSP1 (lymphocyte specific protein 1).

Ensembl:

ensembl_id ENSDART00000067030

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049265 lncRNA upstream 65095 31248998 ~ 31258883 (+) True XLOC_024212
TCONS_00047978 lncRNA upstream 283253 30915178 ~ 31040725 (+) False XLOC_024206
TCONS_00049058 lncRNA upstream 296032 30978055 ~ 31027946 (+) True XLOC_024206
TCONS_00049264 lncRNA upstream 961083 30360507 ~ 30362895 (+) True XLOC_024202
TCONS_00049057 lncRNA upstream 979052 30342200 ~ 30344926 (+) True XLOC_024201
TCONS_00047992 lncRNA downstream 10756 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049267 lncRNA downstream 102803 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA downstream 107352 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA downstream 107352 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00049059 lncRNA downstream 1635103 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00047988 mRNA upstream 35320 31277415 ~ 31288658 (+) True XLOC_024214
TCONS_00047987 mRNA upstream 35422 31276842 ~ 31288556 (+) False XLOC_024214
TCONS_00047986 mRNA upstream 48034 31267268 ~ 31275944 (+) True XLOC_024213
TCONS_00047985 mRNA upstream 48188 31264155 ~ 31275790 (+) False XLOC_024213
TCONS_00047984 mRNA upstream 75376 31238606 ~ 31248602 (+) True XLOC_024211
TCONS_00047991 mRNA downstream 10751 31405266 ~ 31418457 (+) False XLOC_024217
TCONS_00047993 mRNA downstream 473753 31868268 ~ 31882618 (+) True XLOC_024219
TCONS_00047994 mRNA downstream 517638 31912153 ~ 31935817 (+) False XLOC_024220
TCONS_00047995 mRNA downstream 534810 31929325 ~ 31941241 (+) True XLOC_024220
TCONS_00047996 mRNA downstream 564396 31958911 ~ 31985487 (+) False XLOC_024221
TCONS_00047980 other upstream 342531 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 352018 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 985989 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047963 other upstream 1147419 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047922 other upstream 2820013 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00048011 other downstream 1188225 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00048019 other downstream 1744560 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048028 other downstream 2334769 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 2385998 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 3381043 34775558 ~ 34789619 (+) True XLOC_024253

Expression Profile

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