RNA id: TCONS_00048030


Basic Information

Item Value
RNA id TCONS_00048030
length 1846
RNA type mRNA
GC content 0.54
exon number 10
gene id XLOC_024240
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33849647 ~ 33969717 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCACATGGATTCTGGTGTGGTCATGCGAGCGCAGCTGAGCGGCAGAGCTATGCTGGCCAGCTGCTGCTGAAACGCCAGTGGACTTGCACCGCGCTAGCACTCGCAGCACCCAGCGCCTATGGACCGCCGAGCTTAATGATGTATTTTGTGATTTCAGCTATGAAAGCTCAAATCGAAATAATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTATGGCGTGATAACGTGCGAGGGCTGCAAGGGCTTCTTCAGGAGGAGTCAGCAGAGCAATGCGGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATTGACCGCACCAGCCGGAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGTGACGCGGTGAAGTTTGGCCGAATGTCAAAGAAACAGCGGGACAGCCTGTATGCGGAAGTGCAGAAACACCggctacagcagcagcagcggGACCACCAGCAGCAGCCCGGTGAAGCCGAACCCCTTACCCCAACTTATGGCCTCTCCACCAATGGTCTGACCGAGCTCCACGATGATCTGAGTGGATACATGAATGGCCACACGCCGGATGGCACCAAGCCTGACTCAGGAGTCAGCAGCTTCTACCTGGACATCCAACCCTCACCTGATCAATCCGGCCTGGACATCAATGGCATCAAGCCAGAGCCCATCTGCGACTTTACCCCTGGCTCAGGCTTCTTCCCCTACTGCTCCTTCACCAATGGGGAGACGTCCCCCACCGTTTCCATGGCTGAGTTGGAACATCTGGCCCAGAACATTTCCAAGTCCCACATGGAGACGTGTCAGTACCTGAGAGAAGAACTTCAGCAGATGACCTGGCAGGCGTTCCTTCAGGAGGAGGTGGAGAACTACCAGAGCaagCCCAGGGAAGTCATGTGGCAGTTGTGTGCCATCAAAATCACAGAGGCCATTCAGTATGTGGTGGAGTTTGCCAAGCGCATCGACGGCTTCATGGAGCTCTGTCAGAATGATCAGATAGTGCTTCTCAAAGCAGGCTCTTTGGAGGTGGTGTTCGTCAGAATGTGCCGTGCCTTCGACCCTCAGAACAACACAGTCTATTTCGATGGAAAGTATGCCGGGCCTGATGTCTTTAAATCATTAGGCTGCGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTCTCTGAAGACGAGATCGCCCTGTTCTCCGCCTTCGTCTTGATGTCTGCCGACCGATCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTCCAGCAGAAGATCCAGCTGGCCCTCCAACATGTTCTGCAGAAAAACCACAGAGAGGACGGCATACTGACAAAGTTGATATGCAAAGTGTCCACGCTGCGAGCCCTGTGCAGCCGGCATACGGAAAAGCTGACGGCGTTCAAAGCAATATACCCAGACATTGTCCGCGCACATTTCCCCCCTTTGTACAAGGAGTTATTCGGATCGGACTTTGAGCAGTCGATGCCCGTTGACGGGTAGCATTTCCCTGCGCCCTGATGCCACACCGTGGGGAATGTCAAGCTTCAATCTGAGACACTTTAGCAgtgccctgcacacacacacacacatatgcacacacacctgGATGGAcgacacactgcacacacacacacacacttttcccccctaaccttttttttttttggccattttTTTTTCGTCAGGGAGATGATGATAATGGACTGGGTAGGACTCCAGCGGTTTATTTTTGGGGGTTTGTTCCCTCTTACTGACACAGGTGGGATTCGGAGCCCAGGGGAGAGGACGAGAAGAtgaagac

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048511 rhythmic process biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060306-2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within cerebellum morphogenesis and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in brain and eye. Orthologous to human RORA (RAR related orphan receptor A).

Ensembl:

ensembl_id ENSDART00000121449

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049061 lncRNA upstream 239694 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049060 lncRNA upstream 346083 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049271 lncRNA upstream 410027 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049270 lncRNA upstream 500912 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049059 lncRNA upstream 813543 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049062 lncRNA downstream 72291 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00048036 lncRNA downstream 72291 34035503 ~ 34050402 (+) False XLOC_024243
TCONS_00048037 lncRNA downstream 80068 34043280 ~ 34043756 (+) True XLOC_024243
TCONS_00049063 lncRNA downstream 91544 34054756 ~ 34138343 (+) False XLOC_024244
TCONS_00049272 lncRNA downstream 91663 34054875 ~ 34137434 (+) True XLOC_024244
TCONS_00048027 mRNA upstream 583094 33256012 ~ 33266553 (+) True XLOC_024233
TCONS_00048022 mRNA upstream 599324 33192796 ~ 33250323 (+) False XLOC_024232
TCONS_00048032 mRNA downstream 8807 33972019 ~ 34009675 (+) False XLOC_024241
TCONS_00048033 mRNA downstream 8941 33972153 ~ 34008525 (+) True XLOC_024241
TCONS_00048034 mRNA downstream 49881 34013093 ~ 34027379 (+) False XLOC_024242
TCONS_00048035 mRNA downstream 51311 34014523 ~ 34027440 (+) True XLOC_024242
TCONS_00048038 mRNA downstream 283413 34246625 ~ 34267435 (+) False XLOC_024245
TCONS_00048029 other upstream 69019 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 120249 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048019 other upstream 710447 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 1238208 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 2868200 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048052 other downstream 812346 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 828150 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 1918203 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048139 other downstream 2493588 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 2546462 36509674 ~ 36509789 (+) True XLOC_024328

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000330_03111967_03139685.mRNA True 3442 mRNA 0.51 17 CI01000330 3111236 ~ 3139744 (+)