RNA id: TCONS_00048033


Basic Information

Item Value
RNA id TCONS_00048033
length 3095
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_024241
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33972019 ~ 34009675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACATTCGGGAATTAGGACTGTTATGATGGAGAAACGTCAACGTGCAAAGCTCAAGAGTCAGTACGGTGTCTTATTAACGATAGATATGAATGACATCTAAAAGTTAAAAACAAACCAAAGACCATGGAGTTAAAATGGGATGTAGAAGAAGCTGCAGCCGCTACTCCTTATGTTTTCTCCAGAGATCTCTTTGAAAAGTTCACTCTGGCGCCAAACGTCAAAGAACTGTTCGCTCTTTTACACAGctcTGGTGTAAAACCAGAGGACGCTGGTCAGAAAGAGGCCGATGCAGGATCACAGCCAGCGAAGTGTGACGAAGTTTCAGATGTTAGTAACGCCTTGGCTGCAGACGAGCCCACGGCTGAATGCAAACCAACTCAAAAAGCCAAATCTACACCTGAGAAGAACTCTGTTGTTTCAGCTTTTCCTGAACCCTTAGTCCCGTACCCCTGCTTCACCAAGATCAATGCAAAAGAACGCAGATCATACATCAGCATGCTCAAATCCAAGAATTATAAGAAAGCTTCAAAGCGTTTGATCGAGCTGGTGAGGAATGAAACGACAGAGTTTATGAAATACCTGCAAGAGGTTTCCAGATTGCATGCTGATGGGTACAACTACATGCCAGCAGATGCCATCCGCTACACTGAGGAATATTTTACCGCCTGCTTGGATCATGTGAAGAGTTACCCACAGGTTTACGGTATTCAGGAGATTACAAGTCTGACCAGTCTAAAATTTGTGTGTACAATATCGCTCAACTTTGAGAAACAGATTCTGGCGATGGGTAAAACAGACATGGTAAAAGAAAATGCGATACCGGCAAACACTCCACTTGCTGTAGATTATGAGAGTGTGGCCAAAGTGGTTCCTCCAGCTAAAAAAGCACATTCAGTACACAATGCCATCAGCAGTGACAGtaatgcagaaaagctgagcgctACATACGAGCCACATGTGTGCTTAGCCAAAGAGGCCTTCATTCAGCTCCTGAACAACAGCTCTGAGCTCACTGAATCATGGGAGCTGCCAGTGTGGGTCAGAATGAATCCTGGGAAAGgCATCTGTCAGAGTAAGACAGCGTTCATCGATGCTCCTCTACTGAAGACGGAGATGAGCTGCAGAGAGAGGAGTTTACTGTTTCACGAAGAGAGCCTGAAGTTGCTCTTTTCCAAGACTTCAACAAGACCAGTGTTTTTCGTCACTGGAGAAGAGCTGAGCTTCAAAACCACTCCTCCTGCTGAGGATAAAACCTCCAGAAGTGTGGTGACGTTTGACGACACTAGTATGGATTTCGAGACTGACCTCACAGATCTGGAGTCCTTCGGCGAGTCTTACAAGCCCACTAAGAAAGCAAAGgaccaaaataaaaagaaaacaaccgGCCTTAATCCGAATGCAGCTCCGTCTCAACTTACCCCAAGCCCCAAGAAACCGACAGACccttcagatgcaaaaaaacccACCTCACCATCTGAAAACACTCCTGAAACTGTGCCTGAGGAGCAAGCTGAAACAAACACGACTCTGGATGATGGAGGAAAAACTGCTGTACATGGAAATGAAGAGTCTGAAACGCCCTCCGTTCAGTGTCCGCCTGTCAAACGGCCAAGATCCTTGAAGGATGACCAAACGGAGCCTGATTCAGATTCGGATGAAGGACGACTGATCATCGACCACATTGTTTCCCCACAGAGACCTTCAGCCCAGGAGCCAGCAGCATCCCTCGAACCAGCGGCTCCATCTCCTGCAAACCCTCCCGGGGGCAAAGGAGTGAAGAAGGGCGTCAAGCGGCAGAGAACTTCAGGCGAGTGTGATCAGCTCGGGCAGATCCTGAAGATGCAGGACGCCATGCTCAAATCCACACCCAGCAAGAGCCAGGAGCCCGTCAAAGCACAGGTCCCGGAAGAGAAACACCCTGAAGTGAAGAGCCACTCGCTCGTCAAAACGGGTGTGTCGTCATATCTGGAGTCCAGAGCGGGACAGGAGGAGGACGGATCGCTGCCTGCCGACACTCCTGTGATGCTGTCCGCTCAGAAAAAACGTCTTCTGCGGGAGTATCTTCAGGCCAGTGCTGAGGATGAGCTGGACTATGATCCTCCAGCAGAGGGCAGTGTTTTCTACAAACTCTACAGTCTGCTGGACGTCCTGCTAATGGTGCGCAGCAGTGTGGACATCGCTCACCCGAAACACGACAGAAAGACCTTCAGGGCTGTTCCTGTGCACATTTTACCCAAGCTGGAGTATCAGCTGTGTTACGGAGCCGAGAGTTTGACCCACACAGAGGCCTGTCAGCTGTGGGCTGAGAAGCTGCTGCACTCCAGCACCGAGTCGTTCGTCAGTCGCATTAATGCACACACTTCAGAAGTGGCTCAGATGCAGAAACTGCCCGACGACTGGATTCAAAACCTCACCTGTGACTTCAAGCCAGCTAGATGTCTAAACACCCTCTACCACTTACTGAAAAAAGTCTCAGCGTTGCAGGAAGGTCGATACATGCTGGTCCACAAACCTCGTGAGGGATTTGTAACCATCTATAAAGCTAGCGATGAAGCAAAGGCTGTGCGCGGCGTGTTGAACTTACAGGCCACACACTGTGGAACCCCACCTGTACCTCCAGGAGTCCCTTGGGTTCCTTTGGACCCTACGCACGTCCTGCCATTTCATCAGAAACACAACAGACCACCCTGCACCTTCCCTCCACGTCCACCCCCTCAGCCAAAAGTTAAGGCGGGACCAAAGCAAAGACAGAGAAAAAAAGCTTGCAGACAACCACAAAAAAGCAACGCATCAGCCAACCCCAATGACTCGCCAAAGACGAAGAAGAAACAAGCTGCTCGTATGAAGCTATCATTGCTGGACAACATGAGGGACAAGCTGCTGAAGGACCTGCAGACCAGTGAAGATGAATAGACCCTCGTCTTgatgtgttgttgttttggtttgttcTTAAGCACTTAGCATAAATTGATATGCTTTACAGCAAACATAATAATAGTGTGTAGACAGTAAATGTGTGACcaagttttgtattatttttggcaGAAGaagataaaagtattttttaaataaaaaaaatgttattattaatat

Function

GO:

id name namespace
GO:0042795 snRNA transcription by RNA polymerase II biological_process
GO:0042796 snRNA transcription by RNA polymerase III biological_process
GO:0045945 positive regulation of transcription by RNA polymerase III biological_process
GO:0008023 transcription elongation factor complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060306-1 Predicted to be involved in positive regulation of transcription by RNA polymerase III; snRNA transcription by RNA polymerase II; and snRNA transcription by RNA polymerase III. Predicted to be part of transcription elongation factor complex. Orthologous to human ICE2 (interactor of little elongation complex ELL subunit 2).

Ensembl:

ensembl_id ENSDART00000121498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049061 lncRNA upstream 362200 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049060 lncRNA upstream 468589 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049271 lncRNA upstream 532533 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049270 lncRNA upstream 623418 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049059 lncRNA upstream 936049 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049062 lncRNA downstream 26978 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00048036 lncRNA downstream 26978 34035503 ~ 34050402 (+) False XLOC_024243
TCONS_00048037 lncRNA downstream 34755 34043280 ~ 34043756 (+) True XLOC_024243
TCONS_00049063 lncRNA downstream 46231 34054756 ~ 34138343 (+) False XLOC_024244
TCONS_00049272 lncRNA downstream 46350 34054875 ~ 34137434 (+) True XLOC_024244
TCONS_00048031 mRNA upstream 2436 33939728 ~ 33969717 (+) True XLOC_024240
TCONS_00048030 mRNA upstream 8941 33849647 ~ 33963212 (+) False XLOC_024240
TCONS_00048027 mRNA upstream 705600 33256012 ~ 33266553 (+) True XLOC_024233
TCONS_00048026 mRNA upstream 721830 33202294 ~ 33250323 (+) True XLOC_024232
TCONS_00048025 mRNA upstream 727310 33201727 ~ 33244843 (+) False XLOC_024232
TCONS_00048034 mRNA downstream 4568 34013093 ~ 34027379 (+) False XLOC_024242
TCONS_00048035 mRNA downstream 5998 34014523 ~ 34027440 (+) True XLOC_024242
TCONS_00048038 mRNA downstream 238100 34246625 ~ 34267435 (+) False XLOC_024245
TCONS_00048039 mRNA downstream 238582 34247107 ~ 34261132 (+) False XLOC_024245
TCONS_00048040 mRNA downstream 238828 34247353 ~ 34268439 (+) True XLOC_024245
TCONS_00048029 other upstream 191525 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048028 other upstream 242755 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048019 other upstream 832953 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 1360714 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 2990706 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048052 other downstream 767033 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 782837 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 1872890 35881415 ~ 35881531 (+) True XLOC_024292
TCONS_00048139 other downstream 2448275 36456800 ~ 36456918 (+) True XLOC_024327
TCONS_00048140 other downstream 2501149 36509674 ~ 36509789 (+) True XLOC_024328

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000330_03149640_03168640.mRNA True 2861 mRNA 0.47 12 CI01000330 3149640 ~ 3168824 (+)