RNA id: TCONS_00048025


Basic Information

Item Value
RNA id TCONS_00048025
length 3872
RNA type mRNA
GC content 0.38
exon number 9
gene id XLOC_024232
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 33192404 ~ 33250323 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttctttttaacagcaatatattaataataaaataataatagtatatgtgtgtgtgtgtgtgtgtaaatagacagaaaaaatatataatgataataataaatcatttaataataataataataataataataataataataataataagagtcaattgttattattatttaggtcaatacagcaaattattattataccaatttgtttacaaaacaaactCACCATCAGCTCATATCGATGTTGTTTTTGTCCCTGTAGAGGGCGCAACAGGACAAACCAAAAATATCCGAGGAGGCTCAATAACACAAGTGTCCCCCTCTCCTCTGACATCCCATCCACAGCTCAGTCTCAGCACCAGTAGCCCGTCAATCAACATCAACCATTAACATCCAATTAACATCCAAACATTCCCTCCACAACAACCTACAGATAATAAACAAGCGTtaaacacacactgaaaacaaAGCATATGAAACGCGTTCACCACATGGAAACACGCTCTAGTTTATGCTAATGACGTCGTCTGAGGCTCGCCTATGAAAACATGGGCACTTCCGGTGTGATCTGAAAGCGTTGCTCCGCGTCCTCGCGCGCGCACTCACACTCAGCGTCTCCGGTTTGCGTTCATCTCAAGGAAACGCGTTCATTAAGAGGCTTATTTGGTGTCAGGATGGCGGCTACATCGCTGGAGGCGGTCAAACGGAAGATAAAACTGTTGCAAGAGCAGGCGGACGGTGCTGAAGATAAAGCGGAGAAACTGCAGAAGGAGTTGGCGCACGAGAGGAAAGCCAGAGAAACAGCTGAAGGTGATGTGGCATCCCTGAACAGACGTATCCAGCTGGTTGAGGAGGAGCTGGACAGGGCACAGGAGCGTTTGGCCACTGCCCTGCAGAAGCTGGAGGAGGCCGAGAAGGCAGCCGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACAGAGCTCTGAAAGACGAGGAGAAGATGGAGATTCAGGAGATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATTGTTGAGGGTGAGCTGGAACGCACAGAGGAACGTGCAGAGCTCAACGAGAGCAAATGCTCAGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCTCTGGAAGCCCAGGCTGAGAAGTACTCACAGAAAGAAGACAAGTATGAGGAGGAGATCAAGGTGCTCACTGACAAACTGAAGGAGGCTGAGACTCGCGCTGAGTTCGCTGAAAGGTCCGTCGCCAAGCTTGAGAAGACCATCGATGATCTTGAAGATGAGTTATATTCCCAGAAACTCAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAATGACATGACTTCAATATAAACTTCATCACAGACGCGTCCCGCCGGCTGATCGATCATCACTCTGCTCTTTCCAGCCTTTCCTATTCTctcatccctctctctctctctctcatttctcttCATCTAAGTGTTTTTATCATCTCCTCTTGTACAGCTTTCATTTTCTCTCCTGTATGTAAAACTCTGTAAACCTTGTCCTTTTTGTGTCGTCGTTtgtttctcttcattttttttcggATTGCTTTTATTGCCGTGGCTCTAATAAAGTCCGAAGCACTGGAAGTCttctgttttttcttcttctatggttgtggttttgttttattgAGCTCTCGTTCGTCTAGTGTTTAATTAAGCTGATGGGTTTTCATGTGAAGAGCGTGTCTGCACGTCGGTTTCCCTGCATTTTCATATTAGGCAAATTCATGCTTTCCTACTATTCAAATTCCTGAGGCTTTTAATCAAGGAAGTACATGATGGTCTTCTCTGTTTTAAGGGCTGTCAATGAAACCGCTCTACTATCTGTTGGTGCTCATACTGCAGTATTAGTGAATGTGACGCATCCCACACTGCAAAAAGTGATTACTGGCCGTAAAAGTAAACCTATTGCCTTAAAGACTAGttgatttttgtaaaataaaaaaaaattaagtatttatgttgtaactttaaaacattaaaggtgctgtatgtacgtttttgactcttctaaagcataaaaatgccatcaaatgtttgcagatgtttaagaaacatgctgaagtgaatgtttttgtttatctgaaaaacaatgctgaagtctgatattctgctttgaaaatgtgcgttatgtGCTGGAACGTCTGCTTTGGTTTCTGtttttggtccctttaacctgcacaatgccagtttagccagttATATTTCAGCATCTCGGGTTGCCTTGGTGTGATTTATTCAGTCataaaggctctcaaagcatgtgtccaCGACTGAAAtacgacctctggtggacagtagctgactctgaaatgagatgcagattcagagttccacatgaggtggttattaattcgCAAATAATAGAAGTATTATGAACGTTAACATTTGGTGAGCAGGTTaaattgtaaccctgtgtcctaaaaACACGCTATActatgagatttgcagtgatgagcaatttgactgtttgcaccagacaaaacatgacaaagttaaatacagccattcagaagcacagaatagtgcacgtactgcactccaacgaaatggtaaggtttataatctaattaatacatattaaacttgtttaacattattaaatgtagatgctgaatcactgatatgtgttggcctGCACAGTTCTGAAGATCCaattcaaacggtttattttagcAAAACTATCTCCTGCTGCTTTTAGTAGGGCAATAAACGTCATTTAACATGCCATTCAAACTCGCATTAATagaatttaacactgaataaagcatgtgaggtgtacctgaggtgataatTGTCAGTTTCAGAAATAAGCCATTTCCAAAacatacatttcaggtgttggttaggacaaaatcTCATTTTAATATGGGAAATAGTTTTCCATCTGTCTTTGCTTTTAGTTAGAACTTTTAAAATCAGCCTTCGTTGATGTCGGCAACCTACTCTTgcctgtgttttgaaccaggggtTGCAATACCTAggtcaaccactgggtgtcaaactttaCATACTGCACCATTGTTTAGTAAACTAAAGAGTTTTATCGAATAatttgaaggtaatgagtttactcacttttttaactaatcactttttattcaCCTGTCAAAATATGACttgctgtttatttaaattacttatttaaaaggatttgaaacaacacgattcttaatgtttttttggcgggggacaacttaattgttttatgtacaatccacttaaatttgtaaaactttaTTAAGTTggtttaatcgatttgtgttgggaaagcatgaaggaattgtgtggagctcagcatttttttttttttttttttttttttttttttttttttttttttttcacagtggaGACTTTTAGTTAAGAATGAGAATGTTTTGCACACTGATGTcagtaaaataacacattttaatataatatgtaaGCTACAtattcattaagaaaataaatccGGTTTAGAATAAGAATGTAACataatagtattttaaaacaaTTGCTAATGTCGCAGTACAGGGCCATGATGTTTTCTGAAAACAATTCTTTTCAACCAGTTGCCAAGGCAATATTGCTCGTTTGAACAGTTTATTCAAAATGACGGCTtgattataattttaaatgaaaaatctttttaaaaaaatgcatatatgtAGATACAAAAACTATCACTGGGATGGTACCCTttcaaaaagtacatttttttaattctttttttaaagtacttGTATGTACTTTAAAAGGATTACTATGTTAATATACACACTCCTTTACGTACAAA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0005884 actin filament cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05206 MicroRNAs in cancer
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-854 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be active in actin filament. Is expressed in adaxial cell; heart; and musculature system. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1).

Ensembl:

ensembl_id ENSDART00000192378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049059 lncRNA upstream 165623 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049267 lncRNA upstream 1698258 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA upstream 1698258 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA upstream 1698258 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00047992 lncRNA upstream 1791853 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049270 lncRNA downstream 99951 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049271 lncRNA downstream 162277 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049060 lncRNA downstream 256502 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 360758 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00049062 lncRNA downstream 790660 34035503 ~ 34036111 (+) False XLOC_024243
TCONS_00048016 mRNA upstream 50037 33063762 ~ 33151690 (+) False XLOC_024230
TCONS_00048017 mRNA upstream 50037 33072676 ~ 33151690 (+) False XLOC_024230
TCONS_00048018 mRNA upstream 50037 33072748 ~ 33151690 (+) True XLOC_024230
TCONS_00048015 mRNA upstream 123448 33046060 ~ 33078279 (+) False XLOC_024230
TCONS_00048014 mRNA upstream 142721 33033633 ~ 33059006 (+) False XLOC_024230
TCONS_00048027 mRNA downstream 11169 33256012 ~ 33266553 (+) True XLOC_024233
TCONS_00048030 mRNA downstream 604804 33849647 ~ 33963212 (+) False XLOC_024240
TCONS_00048031 mRNA downstream 694885 33939728 ~ 33969717 (+) True XLOC_024240
TCONS_00048032 mRNA downstream 727176 33972019 ~ 34009675 (+) False XLOC_024241
TCONS_00048033 mRNA downstream 727310 33972153 ~ 34008525 (+) True XLOC_024241
TCONS_00048019 other upstream 62527 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048011 other upstream 590288 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00047980 other upstream 2220280 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 2229767 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 2863738 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00048028 other downstream 484441 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 535670 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 1530715 34775558 ~ 34789619 (+) True XLOC_024253
TCONS_00048053 other downstream 1546519 34791362 ~ 34791466 (+) True XLOC_024254
TCONS_00048100 other downstream 2636572 35881415 ~ 35881531 (+) True XLOC_024292

Expression Profile

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